RP11 was isolated from forest soil following enrichment with 4-hydroxybenzoic acid. Cells of RP11 are aerobic, non-sporulating, exhibit swimming motility, and are rods (0.8 µm by 1.4 µm) that often occur as diplobacillus or in short chains (3-4 cells). Optimal growth on minimal media containing 4-hydroxybenzoic acid (µ=0.216 hr) occurred at 30 °C, pH 6.5 or 7.0 and 0% salinity. Comparative chemotaxonomic, genomic and phylogenetic analyses revealed the isolate was distinct from its closest relative type strains identified as LMG 27731, LMG 16225 and CF1. Strain RP11 is genetically distinct from , its closest relative, in terms of 16S rRNA gene sequence similarity (98.7%), genomic average nucleotide identity (94%) and DNA-DNA hybridization (56.7 %±2.8). The composition of fatty acids and substrate utilization pattern differentiated strain RP11 from its closest relatives, including growth on phthalic acid. Strain RP11 encoded the greatest number of aromatic degradation genes of all eleven closely related type strains and uniquely encoded a phthalic acid dioxygenase and paralog of the 3-hydroxybenzoate 4-monooxygenase. The only ubiquinone detected in strain RP11 was Q-8, and the major cellular fatty acids were C, 3OH-C, C cyclo, C cyclo ω8c, and summed feature 8 (C ω7c/ω6c). On the basis of this polyphasic approach, it was determined that strain RP11 represents a novel species from the genus for which the name sp. nov. is proposed. The type strain is RP11 (=DSM 110123=LMG 31517).
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http://dx.doi.org/10.1099/ijsem.0.004029 | DOI Listing |
ISME Commun
March 2021
School of Integrative Plant Science, Bradfield Hall, Cornell University, Ithaca, NY, USA.
Int J Syst Evol Microbiol
September 2020
School of Integrative Plant Sciences, Bradfield Hall, Cornell University, Ithaca, NY, 14853, USA.
Two bacterial strains, 1N and 5N, were isolated from hemlock forest soil using a soluble organic matter enrichment. Cells of 1N (0.65×1.
View Article and Find Full Text PDFInt J Syst Evol Microbiol
March 2020
School of Integrative Plant Sciences, Bradfield Hall, Cornell University, Ithaca, NY, 14853, USA.
RP11 was isolated from forest soil following enrichment with 4-hydroxybenzoic acid. Cells of RP11 are aerobic, non-sporulating, exhibit swimming motility, and are rods (0.8 µm by 1.
View Article and Find Full Text PDFArch Microbiol
May 2020
College of Life Science and Agronomy, Zhoukou Normal University, Zhoukou, 466001, China.
This study investigated the regulatory role of Rhodopseudomonas palustris RP11 in alleviating TBBPA-induced harmful effects in soybean seedlings. In this study, the characteristics of growth promotion by strain RP11 were studied by analysing 5-aminolevulinic acid (ALA) and indole-3-acetic acid (IAA) production, as well as phosphorus-solubilizing and potassium-solubilizing ability. In the pot culture conditions, we tested whether strain RP11 improved soybean seedlings tolerance against TBBPA by measuring the root length and physiological parameters of the seedlings treated with strain RP11 and different concentration of TBBPA (0, 5, 50, 100, and 1000 mg/kg) together.
View Article and Find Full Text PDFRNA Biol
March 2019
a Oklahoma Center for Respiratory and Infectious Diseases , Oklahoma State University, Stillwater , OK , USA.
Long non-coding RNAs (lncRNAs) are a new arm of gene regulatory mechanism as discovered by sequencing techniques and follow-up functional studies. There are only few studies on lncRNAs as related to gene expression regulation and anti-viral activity during influenza virus infection. We sought to identify and characterize lncRNAs involved in influenza virus replication.
View Article and Find Full Text PDFEnter search terms and have AI summaries delivered each week - change queries or unsubscribe any time!