AI Article Synopsis
- Genesis is a library designed for handling phylogenetic data, while gappa is a command-line tool for performing common analyses on that data.
- Both tools support various data types like phylogenetic trees, sequences, and taxonomies, providing ease of use and customization.
- They are developed in C++11 and available for free under GPLv3, with additional resources accessible online.
Article Abstract
Summary: We present genesis, a library for working with phylogenetic data, and gappa, an accompanying command-line tool for conducting typical analyses on such data. The tools target phylogenetic trees and phylogenetic placements, sequences, taxonomies and other relevant data types, offer high-level simplicity as well as low-level customizability, and are computationally efficient, well-tested and field-proven.
Availability And Implementation: Both genesis and gappa are written in modern C++11, and are freely available under GPLv3 at http://github.com/lczech/genesis and http://github.com/lczech/gappa.
Supplementary Information: Supplementary data are available at Bioinformatics online.
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Source |
|---|---|
| http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7214027 | PMC |
| http://dx.doi.org/10.1093/bioinformatics/btaa070 | DOI Listing |
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