Postepy Biochem
Zakład Filogenetyki Molekularnej i Ewolucji, Wydział Biologii, Centrum Nauk Biologiczno-Chemicznych, Uniwersytet Warszawski.
Published: December 2019
Introns are non-coding sequences within the genes. They seemed to be just "junk" DNA, although currently are considered as important genetic elements influencing the genome functions, as they increase the diversity of transcriptome and proteome, perform regulatory activities in the cell, affect gene expression, mRNA processing, degradation and translation. Based on the mechanism of their excision, introns were classified into three main categories: spliceosomal, self-splicing and tRNA introns. Spliceosomal introns are unique for eukaryotic organisms. Sequence analyses of orthologous genes in different groups of eukaryotes revealed many cases of intron gains and losses due to the multiple mechanisms. Some of these events took place in the distant past, while others happened relatively recently. It is believed that these processes can act as one of the forces driving the evolution of eukaryotic genes.
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http://dx.doi.org/10.18388/pb.2019_292 | DOI Listing |
RNA Biol
December 2025
Department of Microbiology and Cell Biology, Indian Institute of Science, Bangalore, India.
DEAH box splicing helicase Prp16 in budding yeast governs spliceosomal remodelling from the branching conformation (C complex) to the exon ligation conformation (C* complex). In this study, we examined the genome-wide functions of Prp16 in the short intron-rich genome of the basidiomycete yeast . The presence of multiple introns per transcript with intronic features that are more similar to those of higher eukaryotes makes it a promising model for studying spliceosomal splicing.
View Article and Find Full Text PDFbioRxiv
February 2025
Department of Biochemistry, University of Wisconsin-Madison, Madison, WI 53706.
In eukaryotes, the process of intron removal from nuclear pre-mRNA is performed by the spliceosome, a dynamic molecular machine composed of small nuclear ribonucleoproteins (snRNPs; U1, U2, U4, U5, and U6) and dozens of other protein splicing factors. The U6 snRNP contains the U6 snRNA and the proteins Prp24 and Lsm2-8 heteroheptamer. A key feature of the snRNP is a modified U6 snRNA 3' end, which in (yeast) contains a 3' phosphate.
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March 2025
Institute of Molecular Genetics, Czech Academy of Sciences, Prague, Czech Republic.
Retinitis pigmentosa (RP) is a hereditary disorder caused by mutations in more than 70 different genes including those that encode proteins important for pre-mRNA splicing. Most RP-associated mutations in splicing factors reduce either their expression, stability or incorporation into functional splicing complexes. However, we have previously shown that two RP mutations in PRPF8 (F2314L and Y2334N) and two in SNRNP200 (S1087L and R1090L) behaved differently, and it was still unclear how these mutations affect the functions of both proteins.
View Article and Find Full Text PDFWiley Interdiscip Rev RNA
March 2025
State Key Laboratory of Genetic Engineering, School of Life Sciences, Fudan University, Shanghai, China.
During pre-mRNA splicing, introns are removed by the spliceosome, and the flanking exons are ligated to form mature mRNA, which is subsequently translated into protein. Traditionally, intronic RNAs have been regarded as "junk", presumed to be degraded for nucleotide turnover. Notably, after debranching, some linearized lariat RNAs can be further processed into snoRNAs, miRNAs, and other long non-coding RNAs.
View Article and Find Full Text PDFCell Rep
February 2025
Center for Stem Cell Biology and Tissue Engineering, Key Laboratory for Stem Cells and Tissue Engineering, Ministry of Education, Sun Yat-sen University, Guangzhou, China; Advanced Medical Technology Center, The First Affiliated Hospital, Zhongshan School of Medicine, Sun Yat-sen University, Guangzhou, Guangdong, China; Department of Genetics and Cell Biology, Zhongshan School of Medicine, Sun Yat-sen University, Guangzhou, China. Electronic address:
The catalytic role of U6 snRNP in pre-mRNA splicing has been well established. In this study, we utilize an antisense morpholino oligonucleotide (AMO) specifically targeting catalytic sites of U6 snRNA to achieve functional knockdown of U6 snRNP in HeLa cells. The data show a significant increase in global intronic premature cleavage and polyadenylation (PCPA) events, similar to those observed with U1 AMO treatment, as demonstrated by mRNA 3'-seq analysis.
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