P-glycoprotein (P-gp) is an ATP-dependent efflux pump that has a marked impact on the absorption, distribution, and excretion of therapeutic drugs. As P-gp inhibition can result in drug-drug interactions and altered drug bioavailability, identifying molecular properties that are linked to inhibition is of great interest in drug development. In this study, we combined chemical synthesis, in vitro testing, quantitative structure-activity relationship analysis, and docking studies to investigate the role of hydrogen bond (H-bond) donor/acceptor properties in transporter-ligand interaction. In a previous work, it has been shown that propafenone analogs with a 4-hydroxy-4-piperidine moiety exhibit a generally 10-fold higher P-gp inhibitory activity than expected based on their lipophilicity. Here, we specifically expanded the data set by introducing substituents at position 4 of the 4-phenylpiperidine moiety to assess the importance of H-bond donor/acceptor features in this region. The results suggest that indeed an H-bond acceptor, such as hydroxy and methoxy, increases the affinity by forming a H-bond with Tyr310.
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http://dx.doi.org/10.1002/ardp.201900269 | DOI Listing |
Nat Commun
December 2024
State Key Laboratory of Anti-Infective Drug Discovery and Development, School of Pharmaceutical Sciences, Sun Yat-sen University, Guangzhou, 510006, China.
The faithful charging of amino acids to cognate tRNAs by aminoacyl-tRNA synthetases (AARSs) determines the fidelity of protein translation. Isoleucyl-tRNA synthetase (IleRS) distinguishes tRNA from tRNA solely based on the nucleotide at wobble position (N34), and a single substitution at N34 could exchange the aminoacylation specificity between two tRNAs. Here, we report the structural and biochemical mechanism of N34 recognition-based tRNA discrimination by Saccharomyces cerevisiae IleRS (ScIleRS).
View Article and Find Full Text PDFBiochemistry
January 2025
Department of Applied Chemistry, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-8654, Japan.
Photosystem I (PSI) from utilizes chlorophyll (Chl) with a formyl group as its primary pigment, which is more red-shifted than chlorophyll (Chl) in PSI from . Using the cryo-electron microscopy structure and solving the linear Poisson-Boltzmann equation, here we report the redox potential () values in PSI. The (Chl) values at the paired chlorophyll site, [PP], are nearly identical to the corresponding (Chl) values in PSI, despite Chl having a 200 mV lower reduction power.
View Article and Find Full Text PDFPhys Chem Chem Phys
December 2024
Department of Chemistry, Malaviya National Institute of Technology, Jaipur, J L N Marg, Jaipur-302017, India.
H-bonded complexes between CHCl and HS have been studied in a cold and inert argon matrix using IR spectroscopy. Both molecules were found to act as both a H-bond donor and acceptor, resulting in two different conformers. The more stable one (binding energy 3.
View Article and Find Full Text PDFACS Phys Chem Au
November 2024
Department of Chemistry, Faculty of Science, University of Zagreb, Horvatovac 102a, 10000 Zagreb, Croatia.
In this work, we developed (thio)ureido-calix[4]arene derivatives and thoroughly explored their anion-binding properties in acetonitrile. A series of anions, including important inorganic ones (Cl, HSO , HPO , and HPO ) and several ever-present carboxylates (acetate, benzoate, and fumarate), were studied. All systems were investigated by several methods (NMR, ITC, and UV) used in a synergistic fashion, providing their comprehensive thermodynamic description.
View Article and Find Full Text PDFEnviron Res
November 2024
Institute of Land Engineering and Technology, Shaanxi Provincial Land Engineering Construction Group Co., Ltd., Xi'an, Shaanxi Province, 710021, China; Key Laboratory of Degraded and Unused Land Consolidation Engineering, Ministry of Natural Resources, China; Key Laboratory of Cultivated Land Quality Monitoring and Conservation, Ministry of Agriculture and Rural Affairs, China.
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