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<PubmedArticle><MedlineCitation Status="PubMed-not-MEDLINE" Owner="NLM"><PMID Version="1">31850030</PMID><DateRevised><Year>2021</Year><Month>01</Month><Day>10</Day></DateRevised><Article PubModel="Electronic-eCollection"><Journal><ISSN IssnType="Print">1664-462X</ISSN><JournalIssue CitedMedium="Print"><Volume>10</Volume><PubDate><Year>2019</Year></PubDate></JournalIssue><Title>Frontiers in plant science</Title><ISOAbbreviation>Front Plant Sci</ISOAbbreviation></Journal><ArticleTitle>Genome-Wide Association Mapping for Agronomic and Seed Quality Traits of Field Pea (<i>Pisum sativum</i> L.).</ArticleTitle><Pagination><StartPage>1538</StartPage><MedlinePgn>1538</MedlinePgn></Pagination><ELocationID EIdType="pii" ValidYN="Y">1538</ELocationID><ELocationID EIdType="doi" ValidYN="Y">10.3389/fpls.2019.01538</ELocationID><Abstract><AbstractText>Genome-wide association study (GWAS) was conducted to identify loci associated with agronomic (days to flowering, days to maturity, plant height, seed yield and seed weight), seed morphology (shape and dimpling), and seed quality (protein, starch, and fiber concentrations) traits of field pea (<i>Pisum sativum</i> L.). A collection of 135 pea accessions from 23 different breeding programs in Africa (Ethiopia), Asia (India), Australia, Europe (Belarus, Czech Republic, Denmark, France, Lithuania, Netherlands, Russia, Sweden, Ukraine and United Kingdom), and North America (Canada and USA), was used for the GWAS. The accessions were genotyped using genotyping-by-sequencing (GBS). After filtering for a minimum read depth of five, and minor allele frequency of 0.05, 16,877 high quality SNPs were selected to determine marker-trait associations (MTA). The LD decay (LD<sub>1/2max,90</sub>) across the chromosomes varied from 20 to 80 kb. Population structure analysis grouped the accessions into nine subpopulations. The accessions were evaluated in multi-year, multi-location trials in Olomouc (Czech Republic), Fargo, North Dakota (USA), and Rosthern and Sutherland, Saskatchewan (Canada) from 2013 to 2017. Each trait was phenotyped in at least five location-years. MTAs that were consistent across multiple trials were identified. Chr5LG3_566189651 and Chr5LG3_572899434 for plant height, Chr2LG1_409403647 for lodging resistance, Chr1LG6_57305683 and Chr1LG6_366513463 for grain yield, Chr1LG6_176606388, Chr2LG1_457185, Chr3LG5_234519042 and Chr7LG7_8229439 for seed starch concentration, and Chr3LG5_194530376 for seed protein concentration were identified from different locations and years. This research identified SNP markers associated with important traits in pea that have potential for marker-assisted selection towards rapid cultivar improvement.</AbstractText><CopyrightInformation>Copyright &#xa9; 2019 Gali, Sackville, Tafesse, Lachagari, McPhee, Hybl, Miki&#x107;, Sm&#xfd;kal, McGee, Burstin, Domoney, Ellis, Tar'an and Warkentin.</CopyrightInformation></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Gali</LastName><ForeName>Krishna Kishore</ForeName><Initials>KK</Initials><AffiliationInfo><Affiliation>Crop Development Centre, Department of Plant Sciences, University of Saskatchewan, Saskatoon, SK, Canada.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Sackville</LastName><ForeName>Alison</ForeName><Initials>A</Initials><AffiliationInfo><Affiliation>Crop Development Centre, Department of Plant Sciences, University of Saskatchewan, Saskatoon, SK, Canada.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Tafesse</LastName><ForeName>Endale G</ForeName><Initials>EG</Initials><AffiliationInfo><Affiliation>Crop Development Centre, Department of Plant Sciences, University of Saskatchewan, Saskatoon, SK, Canada.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Lachagari</LastName><ForeName>V B Reddy</ForeName><Initials>VBR</Initials><AffiliationInfo><Affiliation>AgriGenome Labs Pvt. Ltd, Hyderabad, India.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>McPhee</LastName><ForeName>Kevin</ForeName><Initials>K</Initials><AffiliationInfo><Affiliation>Department of Plant Sciences and Plant Pathology, Montana State University, Bozeman, MT, United States.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Hybl</LastName><ForeName>Mick</ForeName><Initials>M</Initials><AffiliationInfo><Affiliation>Crop Research Institute/Department of Genetic Resources for Vegetables, Medicinal and Special Plants, Olomouc, Czechia.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Miki&#x107;</LastName><ForeName>Alexander</ForeName><Initials>A</Initials><AffiliationInfo><Affiliation>Forage Crops Department, Institute of Field and Vegetable Crops, Novi Sad, Serbia.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Sm&#xfd;kal</LastName><ForeName>Petr</ForeName><Initials>P</Initials><AffiliationInfo><Affiliation>Department of Botany, Palack&#xfd; University, Olomouc, Czechia.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>McGee</LastName><ForeName>Rebecca</ForeName><Initials>R</Initials><AffiliationInfo><Affiliation>Grain Legume Genetics and Physiology Research Unit, USDA, ARS, Pullman, WA, United States.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Burstin</LastName><ForeName>Judith</ForeName><Initials>J</Initials><AffiliationInfo><Affiliation>INRA, UMRLEG, Dijon, France.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Domoney</LastName><ForeName>Claire</ForeName><Initials>C</Initials><AffiliationInfo><Affiliation>Department of Metabolic Biology, John Innes Centre, Norwich, United Kingdom.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Ellis</LastName><ForeName>T H Noel</ForeName><Initials>THN</Initials><AffiliationInfo><Affiliation>School of Biological Sciences, University of Auckland, Auckland, New Zealand.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Tar'an</LastName><ForeName>Bunyamin</ForeName><Initials>B</Initials><AffiliationInfo><Affiliation>Crop Development Centre, Department of Plant Sciences, University of Saskatchewan, Saskatoon, SK, Canada.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Warkentin</LastName><ForeName>Thomas D</ForeName><Initials>TD</Initials><AffiliationInfo><Affiliation>Crop Development Centre, Department of Plant Sciences, University of Saskatchewan, Saskatoon, SK, Canada.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><GrantList CompleteYN="Y"><Grant><GrantID>BB/H009787/1</GrantID><Acronym>BB_</Acronym><Agency>Biotechnology and Biological Sciences Research Council</Agency><Country>United Kingdom</Country></Grant><Grant><GrantID>BBS/E/J/000CA392</GrantID><Acronym>BB_</Acronym><Agency>Biotechnology and Biological Sciences Research Council</Agency><Country>United Kingdom</Country></Grant></GrantList><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2019</Year><Month>11</Month><Day>26</Day></ArticleDate></Article><MedlineJournalInfo><Country>Switzerland</Country><MedlineTA>Front Plant Sci</MedlineTA><NlmUniqueID>101568200</NlmUniqueID><ISSNLinking>1664-462X</ISSNLinking></MedlineJournalInfo><KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="N">field pea</Keyword><Keyword MajorTopicYN="N">genetic diversity</Keyword><Keyword MajorTopicYN="N">genome-wide association study</Keyword><Keyword MajorTopicYN="N">genotyping-by-sequencing</Keyword><Keyword MajorTopicYN="N">single nucleotide polymorphisms</Keyword></KeywordList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2019</Year><Month>4</Month><Day>17</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2019</Year><Month>11</Month><Day>4</Day></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2019</Year><Month>12</Month><Day>19</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2019</Year><Month>12</Month><Day>19</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2019</Year><Month>12</Month><Day>19</Day><Hour>6</Hour><Minute>1</Minute></PubMedPubDate><PubMedPubDate PubStatus="pmc-release"><Year>2019</Year><Month>1</Month><Day>1</Day></PubMedPubDate></History><PublicationStatus>epublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">31850030</ArticleId><ArticleId IdType="pmc">PMC6888555</ArticleId><ArticleId IdType="doi">10.3389/fpls.2019.01538</ArticleId></ArticleIdList><ReferenceList><Reference><Citation>Arganosa G. 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