NPM1c impedes CTCF functions through cytoplasmic mislocalization in acute myeloid leukemia.

Leukemia

Department of Medical Oncology and Hematology, Princess Margaret Cancer Center, University Health Network, Toronto, Canada.

Published: May 2020

AI Article Synopsis

  • Normal cytogenetic acute myeloid leukemia (AML) often has a TCTG insertion in the NPM1 gene that causes mislocalization of the protein NPM1c to the cytoplasm, yet the mechanisms behind its role in AML are not fully understood.
  • This study suggests that the mislocalization of NPM1c disrupts the function of CTCF, a protein critical for DNA looping and gene expression regulation, leading to altered gene expression.
  • The researchers confirmed that NPM1c interacts with CTCF, causing CTCF to move to the cytoplasm; by blocking this interaction, CTCF can return to the nucleus and regain its function.

Article Abstract

Normal cytogenetic acute myeloid leukemia (AML) frequently harbor a TCTG insertion in exon 12 of Nucleophosmin 1 (NPM1); the resulting frameshift creates a nuclear export signal (NES) and cytoplasmic localization of NPM1c. However, how NPM1c causes AML is not completely understood. NPM1 participates in multiple protein-protein interactions one of which involves the CCCTC-binding factor (CTCF). Through binding of CTCF binding sites (CBS), CTCF mediates nuclear functions including DNA looping, regulation of gene expression, and RNA splicing. We hypothesized that mislocalization of CTCF into the cytoplasm by NPM1c reduces the functional level of nuclear CTCF and so alters gene expression. We verified the interaction of CTCF with NPM1 and showed that CTCF interacts with NPM1c, with redistribution of CTCF into the cytoplasm. The interaction of CTCF and NPM1c involves the amino terminus of CTCF and the last 50 amino acids of NPM1. By interfering with the interaction of CTCF and NPM1c, CTCF becomes relocalized into the nucleus.

Download full-text PDF

Source
http://dx.doi.org/10.1038/s41375-019-0681-8DOI Listing

Publication Analysis

Top Keywords

ctcf
13
interaction ctcf
12
acute myeloid
8
myeloid leukemia
8
ctcf binding
8
gene expression
8
ctcf cytoplasm
8
ctcf npm1c
8
npm1c
7
npm1c impedes
4

Similar Publications

Cis-regulatory elements bridge enhancers and gene promoters to control gene expression via distal DNA interaction and three-dimensional chromosomal conformation organization. The aberrant changes of cis-acting regulatory systems as one type of the epigenetic regulative ways may be connected with human genetic diseases. Klotho, as an antiaging protein, is selectively expressed in kidney tissues and plays a crucial role in preventing chronic kidney disease (CKD) and renal fibrosis.

View Article and Find Full Text PDF

Altered 3D genome reorganization mediates precocious myeloid differentiation of aged hematopoietic stem cells in inflammation.

Sci China Life Sci

December 2024

Clinical and Translational Research Center of Shanghai First Maternity & Infant Hospital, Frontier Science Center for Stem Cells, School of Life Sciences and Technology, Tongji University, Shanghai, 200092, China.

Inflammation is a driving force of hematopoietic stem cells (HSCs) aging, causing irreversible exhaustion of functional HSCs. However, the underlying mechanism of HSCs erosion by inflammatory insult remains poorly understood. Here, we find that transient LPS exposure primes aged HSCs to undergo accelerated differentiation at the expense of self-renewal, leading to depletion of HSCs.

View Article and Find Full Text PDF

Cohesin positions the epigenetic reader Phf2 within the genome.

EMBO J

January 2025

Research Institute of Molecular Pathology (IMP), Vienna Biocenter (VBC), Campus-Vienna-Biocenter 1, 1030, Vienna, Austria.

Article Synopsis
  • Genomic DNA is organized into chromatin with the help of histones and cohesin, but their cooperation in genome regulation is not well understood.
  • Researchers identified Phf2, a histone demethylase, as a protein that interacts with cohesin, indicating a potential role in regulating transcription at active gene sites.
  • The studies show that Phf2 helps recruit cohesin to transcription start sites and affects the size of chromatin compartments, highlighting an important relationship between histone modification and genome architecture in eukaryotic cells.
View Article and Find Full Text PDF

Hepatocellular carcinoma (HCC) is associated with a dismal prognosis, primarily due to its high rates of metastasis and recurrence. Metabolic reprogramming, specifically enhanced glycolysis, is a prominent feature of cancer progression. This study identifies ubiquitin-specific peptidase 27 X-linked (USP27) as a significant regulator of glycolysis in HCC.

View Article and Find Full Text PDF

Predicting CTCF cell type active binding sites in human genome.

Sci Rep

December 2024

School of Physical Science and Technology, Inner Mongolia University, Hohhot, 010021, People's Republic of China.

The CCCTC-binding factor (CTCF) is pivotal in orchestrating diverse biological functions across the human genome, yet the mechanisms driving its cell type-active DNA binding affinity remain underexplored. Here, we collected ChIP-seq data from 67 cell lines in ENCODE, constructed a unique dataset of cell type-active CTCF binding sites (CBS), and trained convolutional neural networks (CNN) to dissect the patterns of CTCF binding activity. Our analysis reveals that transcription factors RAD21/SMC3 and chromatin accessibility are more predictive compared to sequence motifs and histone modifications.

View Article and Find Full Text PDF

Want AI Summaries of new PubMed Abstracts delivered to your In-box?

Enter search terms and have AI summaries delivered each week - change queries or unsubscribe any time!