We present an efficient and faithful hyperentanglement purification protocol (hyper-EPP) for three-photon system in mixed hyperentangled Greenberger-Horne-Zeilinger states with bit-flip errors in both spatial-mode and polarization degrees of freedom (DOFs), resorting to the fidelity-robust quantum gates and hyperentanglement link. Our high-efficiency hyper-EPP comes from two aspects. One is to pump the higher-fidelity hyperentanglement from different three-photon systems into the same three-photon system with fidelity-robust swap gates, the other is to reproduce some hyperentangled three-photon systems from hyperentangled two-photon subsystems based on hyperentanglement link. Moreover, as the infidelity originating from imperfect single-photon scattering can be heralded as a failure by triggering a detector, our hyper-EPP operates faithfully with the present quantum circuits. Furthermore, our hyper-EPP can be directly extended to purify multiple photon systems entangled in one DOF or hyperentangled in multiple DOFs.
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