Atomic resolution structures have provided significant insight into the gating and permeation mechanisms of various ion channels, including potassium channels. However, ion channels may also be regulated by numerous factors, including the physiochemical properties of the membrane in which they are embedded. For example, the matching of the bilayer's hydrophobic region to the hydrophobic external surface of the ion channel is thought to minimize the energetic penalty needed to solvate hydrophobic residues or exposed lipid tails. To understand the molecular basis of such regulation by hydrophobic matching requires examining channels in the presence of the lipid membrane. Here we examine the role of hydrophobic matching in regulating the activity of the model potassium channel, KcsA. Rb influx assays and single-channel recordings indicate that the non-inactivating E71A KcsA channel is most active in thin bilayers (
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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6802934 PMC http://dx.doi.org/10.1080/19336950.2019.1676367 DOI Listing Publication Analysis
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ACS Nano
February 2025
Institute of Molecular Plus, Department of Chemistry, Tianjin University, Tianjin 300072, People's Republic of China.
Extracting lithium from salt lakes requires ion-selective membranes with customizable nanochannels. However, it remains a major challenge to separate alkali cations due to their same valences and similar ionic radius. Inspired by the K channel of KcsA K, significant progress has been made in adjusting nanochannel size to control the ion selectivity dominated by alkali cations dehydration.
View Article and Find Full Text PDFBiochem Biophys Res Commun
December 2024
Department of Mechanics, College of Architecture & Environment, & Failure Mechanics and Engineering Disaster Prevention, Key Laboratory of Sichuan Province, Sichuan University, Chengdu, 610065, China. Electronic address:
Potassium channels are essential for regulating cellular excitability by controlling K ion flow. In voltage-gated potassium (Kv) channels, C-type inactivation modulates action potentials and holds significant physiological and clinical importance. The selectivity filter (SF) of potassium channels functions as the C-type inactivation gate by alternating between conductive and non-conductive states.
View Article and Find Full Text PDFFaraday Discuss
February 2025
State Key Laboratory of Biogeology and Environmental Geology, Engineering Research Center of Nano-Geomaterials of Ministry of Education, Faculty of Materials Science and Chemistry, China University of Geosciences, Wuhan 430074, China.
Ion transport through biological channels is influenced not only by the structural properties of the channels themselves but also by the composition of the phospholipid membrane, which acts as a scaffold for these nanochannels. Drawing inspiration from how lipid membrane composition modulates ion currents, as seen in the activation of the K channel in Streptomyces A (KcsA) by anionic lipids, we propose a biomimetic nanochannel system that integrates DNA nanotechnology with two-dimensional graphene oxide (GO) nanosheets. By modifying the length of the multibranched DNA nanowires generated through the hybridization chain reaction (HCR) and varying the concentration of the linker strands that integrate these DNA nanowire structures with the GO membrane, the composition of the membrane can be effectively adjusted, consequently impacting ion transport.
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November 2024
Biomedical Imaging Research Center, University of Fukui, Fukui 910-1193, Japan.
The biological membrane is not just a platform for information processing but also a field of mechanics. The lipid bilayer that constitutes the membrane is an elastic body, generating stress upon deformation, while the membrane protein embedded therein deforms the bilayer through structural changes. Among membrane-protein interplays, various channel species act as tension-current converters for signal transduction, serving as elementary processes in mechanobiology.
View Article and Find Full Text PDFBiophys J
November 2024
Department of Electrical, Electronic and Information Engineering "Guglielmo Marconi", University of Bologna, via dell'Università 50, Cesena (FC), Italy. Electronic address:
Molecular dynamics (MD) simulation of biological processes has always been a challenging task due to the long timescales of the processes involved and the large amount of output data to handle. Markov state models (MSMs) have been introduced as a powerful tool in this area of research, as they provide a mechanistically comprehensible synthesis of the large amount of MD data and, at the same time, can be used to rapidly estimate experimental properties of biological processes. Herein, we propose a method for building MSMs of ion channel permeation from MD trajectories, which directly evaluates the current flowing through the channel from the model's transition matrix (T), which is crucial for comparing simulations and experimental data.
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