The paper addressed shortcoming with highly precise and selective 3D structural analysis of native cyclodextrins in mixture using ions observable at low m/z-region by ESI- and APCI-mass spectrometry. Because of, the quantitative and structural analyses of CDs, in general, are vexed by a set of complications. The study outlines our own stochastic dynamic approaches to the latter issues based on new model relations, quantifing the measurable MS outcome intensity. They introduce the so-called stochastic dynamic mass spectrometric diffusion "D" parameter, exhibiting high accuracy, precision, sensitivity and selectivity, respectively. It is linearly connected with the so-called quantum chemical diffusion parameter "D" according to Arrhenius's theory. The most important upshot is that statistical parameters r = 0.99-0.99 has been obtained correlating between D and D parameters. Therefore, we determine high accurately 3D molecular and electronic structures of analytes by mass spectrometry. Fragment peaks at m/z 313, 279, 272, 252, 231, 214, 198, 171, 158 and 141 are examined. Mixtures of CDs and monomeric and acyclic oligomer carbohydrates glucose (1), sucrose (2), raffinose (3), melezitose (4) and cellotriose (5) are also studied. Our method is able to account precisely for the effect of the temperature under ESI- and APCI-MS conditions, as well. Correlative analysess between D parameters of ESI- and APCI-MS measurements under different temperatures is also shown. Chemometric tests are used. Another important results and conclusions, among others, to draw from this research are: (i) excellent linear correlation between D and D parameters of r = 0.99 is found looking at common ions at m/z 141, 158 and 171, belonging to 2-formyl-3,4-dihydroxy-pyranylium, 4,5,6-trihydroxy-6H-pyran-2-carbaldehyde and 3,4,5-trihydroxy-6-oxo-6H-pyran-2-ylmethylidyne-oxonium ions. Thus, we distinguish precisely between the last structure and 3-formyl-4,5-dihydroxy-2,7-dioxa-8-oxonia-bicyclo[4.2.0]octa-1(8),3,5-triene cation. In the case of ion at m/z 141 subtle electronic effects are distinguished between the mentioned structure and the charged 3,4-dihydroxy-6H-pyran-2-carbaldehyde one. The method determines precisely very similar structurally poly-OH-substituted derivatives. Because of, (ii) absolute reproducibility (r = 1) of D parameters of ESI-MS spectra is obtained studying the shown in point (i) MS peaks of β-CD between j and j numbers of experiments. The statistical equation is D = (0.51 ± 3.1.10) × D; (iii) the APCI- and ESI-MS provide identical results studying common MS ions of CDs and the correlation between D and D parameters excludes from error, due to, experiment; and (iv) The correlation between theory and experiment accounting for the factor temperature within our model equations shows r = 0.98 looking at the MS peaks at m/z 313 280, 279, 274 and 252, respectively. The effect of the temperature under both ESI- and APCI-MS conditions on the 3D molecular and electronic structures of CDs is precisely studied, respectively.
Download full-text PDF |
Source |
---|---|
http://dx.doi.org/10.1016/j.bioorg.2019.103308 | DOI Listing |
Gene Regulatory Networks (GRNs) are pivotal in governing diverse cellular processes, such as stress response, DNA repair, and mechanisms associated with complex diseases like cancer. The interventions in GRNs aim to restore the system state to its normal condition by altering gene activities over time. Unlike most intervention approaches that rely on the direct observability of the system state and assume no response of the cell against intervention, this paper models the fight between intervention and cell dynamic response using a partially observed zero-sum Markov game with binary state variables.
View Article and Find Full Text PDFSci Rep
January 2025
Dipartimento di Fisica "G. Galilei", Università di Padova, Via Marzolo 8, 35131, Padua, Italy.
Logarithmic growth-rates are fundamental observables for describing ecological systems and the characterization of their distributions with analytical techniques can greatly improve their comprehension. Here a neutral model based on a stochastic differential equation with demographic noise, which presents a closed form for these distributions, is used to describe the population dynamics of microbiota. Results show that this model can successfully reproduce the log-growth rate distribution of the considered abundance time-series.
View Article and Find Full Text PDFNat Commun
January 2025
Key Lab of Fabrication Technologies for Integrated Circuits Institute of Microelectronics, Chinese Academy of Sciences, 100029, Beijing, China.
Visual sensors, including 3D light detection and ranging, neuromorphic dynamic vision sensor, and conventional frame cameras, are increasingly integrated into edge-side intelligent machines. However, their data are heterogeneous, causing complexity in system development. Moreover, conventional digital hardware is constrained by von Neumann bottleneck and the physical limit of transistor scaling.
View Article and Find Full Text PDFSci Adv
January 2025
Department of Molecular and Cell Biology, University of California, Berkeley, Berkeley, CA 94720-3200, USA.
During meiosis, pairing between homologous chromosomes is stabilized by the assembly of the synaptonemal complex (SC). The SC ensures the formation of crossovers between homologous chromosomes and regulates their distribution. However, how the SC regulates crossover formation remains elusive.
View Article and Find Full Text PDFEnter search terms and have AI summaries delivered each week - change queries or unsubscribe any time!