Simulation of semidilute polymer solutions in planar extensional flow via conformationally averaged Brownian noise.

J Chem Phys

Department of Chemical and Biomolecular Engineering, University of Illinois at Urbana-Champaign, Urbana, Illinois 61801, USA.

Published: September 2019

The dynamics and rheology of semidilute polymer solutions in strong flows are of great practical relevance. Processing applications can in principle be designed utilizing the relationship between nonequilibrium polymer conformations and the material properties of the solution. However, the interplay between concentration, flow, hydrodynamic interactions (HIs), and topological interactions which govern semidilute polymer dynamics is challenging to characterize. Brownian dynamics (BD) simulations are particularly valuable as a way to directly visualize how molecular interactions arise in these systems and are quantitatively comparable to single-molecule experiments. However, such simulations are often computationally intractable and are limited by the need to calculate the correlated Brownian noise via decomposition of the diffusion tensor. Previously, we have introduced an iterative conformational averaging (CA) method for BD simulations which bypasses these limitations by preaveraging the HI and Brownian noise in an iterative procedure. In this work, we generalize the CA method to flowing semidilute solutions by introducing a conformation dependent diffusion tensor and a strain dependent approximation to the conformationally averaged Brownian noise. We find that this approach nearly quantitatively reproduces both transient and steady state polymer dynamics and rheology while achieving an order of magnitude computational acceleration. We then utilize the CA method to investigate the concentration and flow rate dependence of polymer dynamics in planar extensional flows. Our results are consistent with previous experimental and simulation studies and provide a detailed view of broad conformational distributions in the semidilute regime. We observe interconversion between stretched and coiled states at steady state, which we conjecture occur due to the effect of concentration on the conformation dependent polymer drag. Additionally, we observe transient flow-induced intermolecular hooks in the startup of flow which lead to diverse and unique stretching pathways.

Download full-text PDF

Source
http://dx.doi.org/10.1063/1.5122811DOI Listing

Publication Analysis

Top Keywords

brownian noise
16
semidilute polymer
12
polymer dynamics
12
polymer solutions
8
planar extensional
8
conformationally averaged
8
averaged brownian
8
dynamics rheology
8
concentration flow
8
diffusion tensor
8

Similar Publications

Dynamics of non-Markovian systems is a classic problem yet it attracts everlasting activity in physics and beyond. A powerful tool for modeling such setups is the generalized Langevin equation, however, its analysis typically poses a major challenge even for numerical means. For this reason, various approximations have been proposed over the years that simplify the original model.

View Article and Find Full Text PDF

Stochastic resetting has recently emerged as an efficient target-searching strategy in various physical and biological systems. The efficiency of this strategy depends on the type of environmental noise, whether it is thermal or telegraphic (active). While the impact of each noise type on a search process has been investigated separately, their combined effects have not been explored.

View Article and Find Full Text PDF

Discrete state model of a self-aggregating colloidal system with directional interactions.

J Chem Phys

December 2024

Institute for Theoretical Physics, Technical University of Berlin, Hardenbergstr. 36, 10623 Berlin, Germany.

The construction of coarse-grained descriptions of a system's kinetics is well established in biophysics. One prominent example is Markov state models in protein folding dynamics. In this paper, we develop a coarse-grained, discrete state model of a self-aggregating colloidal particle system inspired by the concepts of Markov state modeling.

View Article and Find Full Text PDF

Fractional hyper-ballistic transport under external oscillating electric fields.

Chaos

December 2024

Department of Physics, Faculty of Electrical Engineering and Informatics, Technical University of Košice, Park Komenského 2, Košice 042 00, Slovakia.

The generalized Langevin equation (GLE) for a tagged particle in a liquid of charged particles under the influence of external AC electric fields is studied. For the fractional memory kernel in the GLE, the mean square displacement (MSD) of the particle is studied analytically in both the underdamped and overdamped regimes. The MSD consists of a part corresponding to the absence of the external field and a part affected by the external field, which is expressed through the mean velocity of the particle.

View Article and Find Full Text PDF

Macroscopic systems present particle-type solutions. Spontaneous symmetry-breaking can cause these solutions to travel in different directions, and the inclusion of random fluctuations can induce them to run and tumble. We investigate the running and tumbling of localized structures observed on a prototype model of one-dimensional pattern formation with noise.

View Article and Find Full Text PDF

Want AI Summaries of new PubMed Abstracts delivered to your In-box?

Enter search terms and have AI summaries delivered each week - change queries or unsubscribe any time!