Methyl pentanoate (MP) was recently proposed as a potential biodiesel surrogate due to its negative temperature coefficient region. To provide a basis for constructing an accurate mechanism, chemical kinetics of H-abstraction from MP by an OH radical are investigated theoretically at 200-2000 K. M06-2X/cc-pVTZ is applied for geometry optimizations and frequency calculations. Given the long alkyl-chain in MP, the multi-structural torsional anharmonicity is characterized by using the dual-level MS-T method due to its relatively low computational cost and established accuracy. In particular, AM1 and M06-2X/cc-pVTZ are adopted as low-level and high-level methods in dual-level MS-T, respectively. The results of dual-level MS-T are further used to benchmark against the full high-level method (M06-2X/cc-pVTZ), leading to an uncertainty of less than 30% in the high temperature range. For the single-point energy calculations, the lower computational cost DLPNO-CCSD(T) method is first used to benchmark against the gold-standard method CCSD(T) for small methyl ester (C-C) + OH reaction systems, yielding an overestimation of less than 1.1 kcal mol for barrier height; it is then used to refine the electronic energies for the present reaction system MP + OH. Phase-space theory and conventional transition state theory are used to calculate the H-abstraction rate constants. After compensating the uncertainty of barrier height, the calculated phenomenological H-abstraction rate constants agree well with the experimental data at 263-372 K. Branching ratio analysis indicates that the β-site H abstraction is the dominant channel at 200-1200 K due to its lowest barrier height.
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J Phys Chem A
July 2022
Departamento de Físico-Química, Instituto de Química, Universidade Federal da Bahia Rua Barão de Jeremoabo, 147, Salvador, Bahia 40170-115, Brazil.
Thermal rate coefficients for the hydrogen abstraction reactions of prenol (3-methyl-2-butenol) by a hydrogen atom were calculated with the multipath canonical variational theory with small-curvature tunneling (MP-CVT/SCT). The conformational search was performed with a dual-level approach, and the multistructural torsional anharmonicity effects were corrected through the rovibrational partition function calculated with the multistructural method based on a coupled torsional potential (MS-T(C)). This methodology allows us to estimate the thermal rate constants in the temperature range of 200-2500 K and fit them into two analytical expressions.
View Article and Find Full Text PDFPhys Chem Chem Phys
October 2019
Key Laboratory of Advanced Technologies of Materials, Ministry of Education, Southwest Jiaotong University, Chengdu, Sichuan 610031, P. R. China. and Institute of Material Dynamics, Southwest Jiaotong University, Chengdu, Sichuan 610031, P. R. China and The Peac Institute of Multiscale Sciences, Chengdu, Sichuan 610031, P. R. China.
Methyl pentanoate (MP) was recently proposed as a potential biodiesel surrogate due to its negative temperature coefficient region. To provide a basis for constructing an accurate mechanism, chemical kinetics of H-abstraction from MP by an OH radical are investigated theoretically at 200-2000 K. M06-2X/cc-pVTZ is applied for geometry optimizations and frequency calculations.
View Article and Find Full Text PDFJ Chem Theory Comput
June 2017
Department of Chemistry, Chemical Theory Center, and Minnesota Supercomputing Institute, University of Minnesota, Minneapolis, Minnesota 55455-0431, United States.
For molecules with multiple torsions, an accurate evaluation of the molecular partition function requires consideration of multiple structures and their torsional-potential anharmonicity. We previously developed a method called MS-T for this problem, and it requires an exhaustive conformational search with frequency calculations for all the distinguishable conformers; this can become expensive for molecules with a large number of torsions (and hence a large number of structures) if it is carried out with high-level methods. In the present work, we propose a cost-effective method to approximate the MS-T partition function when there are a large number of structures, and we test it on a transition state that has eight torsions.
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