In this study, we report on the prevalence of 19 virulence genes in enteroaggregative (EAEC) isolates from northern South Africa. Stool samples obtained prospectively from 97 children from 1 to 12 months of age were analyzed, and EAEC isolates were confirmed based on the presence of or genes. We investigated 177 enteroaggregative isolates for the prevalence of virulence genes using multiplex polymerase chain reaction. The chromosomal gene was detected at higher frequency (48.0%) compared with (26.0%). The gene encoding the open reading frame was the most prevalent putative virulence trait detected among the isolates (150/177; 84.7%). None of the genes was statistically associated with diarrhea ( > 0.05). Detection rates were higher during 7-12 month of life with an association observed for the gene and the age group 7-12 months ( = 0.04). Winter was the season with the highest detection rates. Our data reveal a high prevalence of , , and in South African EAEC isolates. Specific genes may provide additional markers for the study of disease associations with age and season of sample collection.
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http://dx.doi.org/10.4269/ajtmh.19-0192 | DOI Listing |
Nat Commun
December 2024
KU Leuven Department of Microbiology, Immunology and Transplantation, Virology, Antiviral Drug & Vaccine Research Group, Rega Institute for Medical Research, Leuven, Belgium.
The 2015-2016 Zika virus (ZIKV) outbreak in the Americas revealed the ability of ZIKV from the Asian lineage to cause birth defects, generically called congenital Zika syndrome (CZS). Notwithstanding the long circulation history of Asian ZIKV, no ZIKV-associated CZS cases were reported prior to the outbreaks in French Polynesia (2013) and Brazil (2015). Whether the sudden emergence of CZS resulted from an evolutionary event of Asian ZIKV has remained unclear.
View Article and Find Full Text PDFNat Commun
December 2024
Lunenfeld-Tanenbaum Research Institute, Mount Sinai Hospital, Toronto, Ontario, M5G 1X5, Canada.
Highly mutable pathogens generate viral diversity that impacts virulence, transmissibility, treatment, and thwarts acquired immunity. We previously described C19-SPAR-Seq, a high-throughput, next-generation sequencing platform to detect SARS-CoV-2 that we here deployed to systematically profile variant dynamics of SARS-CoV-2 for over 3 years in a large, North American urban environment (Toronto, Canada). Sequencing of the ACE2 receptor binding motif and polybasic furin cleavage site of the Spike gene in over 70,000 patients revealed that population sweeps of canonical variants of concern (VOCs) occurred in repeating wavelets.
View Article and Find Full Text PDFIndian J Med Res
November 2024
Department of Health Research, Indian Council of Medical Research, New Delhi, India.
Background & objectives Dengue virus causes frequent outbreaks and epidemics with high morbidity and mortality. It is important to monitor the trends of the dengue virus and its serotypes. We carried out the present work to study the prevalence of the dengue virus and its serotypes in clinically suspected cases of dengue in Rajasthan.
View Article and Find Full Text PDFBMC Public Health
December 2024
Department of Health Statistics, School of Public Health, Shanxi Medical University, 56 XinJian South Road Street, Taiyuan, Shanxi, China.
Background: The accelerated aging process worldwide is placing a heavy burden on countries. PM particulate matter exposure is a significant factor affecting human health and is crucial in the aging process.
Methods: We utilized data from China Health and Retirement Longitudinal Study (CHARLS) and the Survey of Health, Aging, and Retirement in Europe (SHARE) to study the relationship between PM exposure and the frailty index.
BMC Microbiol
December 2024
Department of Clinical Microbiology, Zibo City Key Laboratory of Respiratory Infection and Clinical Microbiology, Zibo Municipal Hospital, Zibo, 255400, China.
Background: Klebsiella pneumoniae bloodstream infection (KP BSI) is a severe clinical condition characterized by high mortality rates. Despite the clinical significance, accurate predictors of mortality in KP BSI have yet to be fully identified.
Methods: A retrospective analysis was conducted on the clinical data of 90 cases of KP BSI.
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