The crystal structure of triphenylmethanol, CHO, has been redetermined using data collected at 295 and 153 K, and is compared to the model published by Ferguson et al. over 25 years ago [Ferguson et al. (1992). Acta Cryst. C48, 1272-1275] and that published by Serrano-González et al., using neutron and X-ray diffraction data [Serrano-González et al. (1999). J. Phys. Chem. B, 103, 6215-6223]. As predicted by these authors, the hydroxy groups are involved in weak intermolecular hydrogen bonds in the crystal, forming tetrahedral tetramers based on the two independent molecules in the asymmetric unit, one of which is placed on the threefold symmetry axis of the R-3 space group. However, the reliable determination of the hydroxy H-atom positions is difficult to achieve, for two reasons. Firstly, a positional disorder affects the full asymmetric unit, which is split over two sets of positions, with occupancy factors of ca 0.74 and 0.26. Secondly, all hydroxy H atoms are further disordered, either by symmetry, or through a positional disorder in the case of parts placed in general positions. We show that the correct description of the hydrogen-bonding scheme is possible only if diffraction data are collected at low temperature. The prochiral character of the hydrogen-bonded tetrameric supramolecular clusters leads to enantiomorphic three-dimensional graphs in each tetramer. The crystal is thus a racemic mixture of S and R motifs, consistent with the centrosymmetric nature of the R-3 space group.
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http://dx.doi.org/10.1107/S2053229619010714 | DOI Listing |
Nano Lett
December 2024
School of Chemical Engineering, National Engineering Research Center for Carbon Hydrate Synthesis, Key Lab of Fluorine and Silicon for Energy Materials and Chemistry of Ministry of Education, Jiangxi Normal University, Nanchang 330022, China.
J Mater Chem B
January 2025
Department of Chemistry, University of Rochester, Rochester, NY 14627-0216, USA.
J Phys Chem B
November 2024
CONICET-Universidad Nacional de Luján, Instituto de Ecología y Desarrollo Sustentable (INEDES), Grupo de Investigaciones Básicas y Aplicadas en Inmunología y Bioactivos (GIBAIB), Av. Constitución y Ruta 5, Luján, 6700 Buenos Aires, Argentina.
Molecular dynamics simulations were performed to investigate the structural and energetic features related to the direct binding of a short interfering RNA (siRNA) molecule on a silica nanoparticle functionalized with 3-aminopropyltriethoxysilane (APTES) groups, immersed in a sodium chloride aqueous solution at physiological concentration. Three different grafting densities of APTES were evaluated, namely, 2.7, 1.
View Article and Find Full Text PDFJ Colloid Interface Sci
February 2025
The School of Chemistry and Chemical Engineering, State Key Laboratory of Power Transmission Equipment & System Security and New Technology, Chongqing University, 174 Shazheng Street, Shapingba District, Chongqing City 400044, PR China. Electronic address:
Non-metal elements are often merely regarded as electronic modulators, yet their intrinsic characteristics are frequently overlooked. Indeed, non-metal elements possess notable advantages in high-abundance, excellent hydrogen adsorption and the ability of active sites to be inversely activated, rendering them potential photoelectrochemical (PEC) materials. However, weak non-metal interbinding, susceptibility to photocorrosion, and high photogenerated carrier recombination rates hinder their practical applications.
View Article and Find Full Text PDFJ Chem Theory Comput
November 2024
Department of Chemistry and Chemical Biology, Institute for Quantitative Biomedicine, Rutgers University, Piscataway, New Jersey 08854, United States.
Vibrational non-Condon effects, which describe how molecular vibrational transitions are influenced by a system's rotational and translational degrees of freedom, are often overlooked in spectroscopy studies of biological macromolecules. In this work, we explore these effects in the modeling of infrared (IR) spectra for nucleic acids in the 1600-1800 cm region. Through electronic structure calculations, we reveal that the transition dipole moments of the C═O and C═C stretching modes in nucleobases are highly sensitive to solvation, hydrogen bonding, and base stacking conditions.
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