Presented herein is a first major density functional theory (BP86/D3/STO-TZ2P) survey of the energetics of saddling versus ruffling for a wide range of dodecasubstituted metalloporphyrins with M = Ni, Cu, Zn, Pd, and Pt. For the majority of XTPP (i.e., β-octasubstituted--tetraphenylporphyrin), the calculations indicated a clear preference for the saddled conformation, consistent with a large body of experimental data. The preference for the saddled conformation relative to the ruffled conformation was found to vary from about ∼0.3-0.4 eV for MeTPP derivatives up to 1 eV for ITPP and (CF)TPP derivatives. For X = Ph, that is, dodecaphenylporphyrins, the saddled and the ruffled conformation are almost equienergetic, with even a slight preference for the ruffled conformation in some cases. This finding provides a satisfactory explanation for the X-ray crystallographic observation of both saddled and ruffled conformations for dodecaphenylporphyrin complexes as well as for spectroscopic evidence for conformational mobility of these complexes in solution. The calculations also indicate near-equienergetic saddled and ruffled conformations for -tetraacetylenyltetrabenzoporphyrins, again consonant with key crystallographic findings. By and large, both the energetics and nonplanar distortions of the metalloporphyrin derivatives correlated well with the Charton and Sterimol B steric parameters of the peripheral substituents.
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http://dx.doi.org/10.1021/acsomega.7b01004 | DOI Listing |
Acta Crystallogr E Crystallogr Commun
October 2024
Laboratory of Organic and Physical Chemistry, Applied Bioorganic Chemistry Team, Faculty of Sciences, Ibnou Zohr University, Agadir, Morocco.
The title mol-ecule, CHBrNO, adopts a cup shaped conformation with the distinctly ruffled imidazolidine ring as the base. In the crystal, weak C-H⋯O hydrogen bonds and C-H⋯π(ring) inter-actions form helical chains of mol-ecules extending along the -axis direction that are linked by additional weak C-H⋯π(ring) inter-actions across inversion centres. The Hirshfeld surface analysis of the crystal structure indicates that the most important contributions for the crystal packing are from H⋯H (51.
View Article and Find Full Text PDFJ Cell Sci
December 2024
Division of Pulmonary, Allergy, Critical Care and Sleep Medicine, Department of Medicine, Emory University School of Medicine, Atlanta, GA 30322, USA.
Tight junctions regulate epithelial barrier function and have been shown to be influenced by multiple classes of proteins. Apical integrins have been identified as potential regulators of epithelial barrier function; however, only indirect approaches have been used to measure integrin regulation of the epithelial barrier. Here, we used polymeric nanowires conjugated with anti-integrin β1 antibodies to specifically target apically localized integrins in either their closed or open conformation.
View Article and Find Full Text PDFChem Sci
September 2024
Department of Chemistry, University of Oxford, Chemistry Research Laboratory Oxford OX1 3TA UK
Butadiyne-linked porphyrin nanorings are fascinating nanometer-sized platforms for exploring electronic delocalization and aromaticity, and they mimic ultra-fast photosynthetic energy-transfer phenomena in plants and purple bacteria. However, little is known about how they interact in the solid state. Here, we compare the crystal structures of several pseudopolymorphs of a six-porphyrin nanoring template complex, and report the structure of the free-base nanoring co-crystallized with C.
View Article and Find Full Text PDFJ Phys Chem A
June 2024
Department of Chemistry, University of Tennessee, Knoxville, Tennessee 37996, United States.
Herein, we compare the electronic structures of the metal-free and nickel(II) derivatives of an annulated -tetraphenyldihydroxychlorin with those of the (metallo)chlorin analogues derived by pyrroline β,β'-ring cleavage of the annulated (metallo)chlorins. These (metallo)chlorin analogues incorporate 8-membered heterocycles in place of the pyrroline, carry oxo-functionalities on the former pyrroline β-carbon atoms, and were previously shown to possess drastically ruffled (twisted) nonplanar conformations. The magnetic circular dichroism spectra of all chromophores investigated feature chlorin-like UV-vis spectra and correspondingly reversed (positive-to-negative in ascending energy) sign sequences in the -band region, indicative of ΔHOMO < ΔLUMO relationships.
View Article and Find Full Text PDFActa Crystallogr E Crystallogr Commun
May 2024
Department of Chemistry, Purdue University, 560 Oval Drive, West Lafayette, IN, 47907-2084, USA.
Title compound , [Ni(CHNO)], a secochlorin nickel complex, was prepared by diol cleavage of a precursor -di-hydroxy-dimethyl-chlorin. Two crystallographically independent mol-ecules in the structure are related by pseudo-A lattice centering, with mol-ecules differing mainly by a rotation of one of the acetyls and an adjacent phenyl groups. The two mol-ecules have virtually identical conformations characterized by noticeable in-plane deformation in the A mode and a prominent out-of-plane deformation in the B (ruffling) mode.
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