Objective: Fluorescence molecular tomography (FMT) is an important tool for life science, which can noninvasive real-time three-dimensional (3-D) visualization for fluorescence source location. FMT is widely used in tumor research due to its high-sensitive and low cost. However, the reconstruction of FMT is difficult. Although the reconstruction methods of FMT have developed rapidly in recent years, the morphological reconstruction of FMT is still a challenge problem. Thus, the purpose of this study is to realize the morphological reconstruction performance of FMT in glioma research.
Methods: In this study, group sparsity was used as a new priori information for FMT. Besides sparsity, group sparsity also takes the group structure of the fluorescent sources, which can maintain the morphological information of the sources. Fused LASSO method (FLM) was proved it can efficiently model the group sparsity prior. Thus, we utilize FLM to reconstruct the morphological information of glioma. Furthermore, to reduce the influence of the high scattering of skull, we modified the FLM for improving the accuracy of morphological reconstruction.
Results: Glioma numerical simulation model and in vivo glioma model were established to evaluate the performance of morphological reconstruction of the proposed method. The results demonstrated that the proposed method was efficient to reconstruct the morphological information of glioma.
Conclusion: Group sparsity priori can effectively improve the morphological accuracy of FMT reconstruction.
Significance: Group sparsity can maintain the morphological information of fluorescent sources effectively, which has great application potential in FMT. The group sparsity based methods can realize the morphological reconstruction, which is of great practical significance in tumor research.
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http://dx.doi.org/10.1109/TBME.2019.2937354 | DOI Listing |
Quant Imaging Med Surg
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Henan Key Laboratory of Imaging and Intelligent Processing, Information Engineering University, Zhengzhou, China.
Background: Photon-counting computed tomography (CT) is an advanced imaging technique that enables multi-energy imaging from a single scan. However, the limited photon count assigned to narrow energy bins leads to increased quantum noise in the reconstructed spectral images. To address this issue, leveraging the prior information in the spectral images is essential.
View Article and Find Full Text PDFBioinform Adv
November 2024
Department of Computer Science, Virginia Tech, Blacksburg, VA 24061, United States.
Motivation: Molecular interaction networks are powerful tools for studying cellular functions. Integrating diverse types of networks enhances performance in downstream tasks such as gene module detection and protein function prediction. The challenge lies in extracting meaningful protein feature representations due to varying levels of sparsity and noise across these heterogeneous networks.
View Article and Find Full Text PDFPLoS One
January 2025
Dept. of Medical Physics and Acoustics, Carl von Ossietzky University of Oldenburg, Oldenburg, Germany.
Music pre-processing methods are currently becoming a recognized area of research with the goal of making music more accessible to listeners with a hearing impairment. Our previous study showed that hearing-impaired listeners preferred spectrally manipulated multi-track mixes. Nevertheless, the acoustical basis of mixing for hearing-impaired listeners remains poorly understood.
View Article and Find Full Text PDFBrief Bioinform
November 2024
School of Electrical Engineering and Automation, Hefei University of Technology, Hefei, Anhui, China.
Despite significant advancements in single-cell representation learning, scalability and managing sparsity and dropout events continue to challenge the field as scRNA-seq datasets expand. While current computational tools struggle to maintain both efficiency and accuracy, the accurate connection of these dropout events to specific biological functions usually requires additional, complex experiments, often hampered by potential inaccuracies in cell-type annotation. To tackle these challenges, the Zero-Inflated Graph Attention Collaborative Learning (ZIGACL) method has been developed.
View Article and Find Full Text PDFNat Commun
January 2025
Graduate Group in Genomics and Computational Biology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.
Single cell ATAC-seq (scATAC-seq) experimental designs have become increasingly complex, with multiple factors that might affect chromatin accessibility, including genotype, cell type, tissue of origin, sample location, batch, etc., whose compound effects are difficult to test by existing methods. In addition, current scATAC-seq data present statistical difficulties due to their sparsity and variations in individual sequence capture.
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