Purpose: To predict the spatial and temporal trajectories of lung tumor during radiotherapy monitored under a longitudinal magnetic resonance imaging (MRI) study via a deep learning algorithm for facilitating adaptive radiotherapy (ART).
Methods: We monitored 10 lung cancer patients by acquiring weekly MRI-T2w scans over a course of radiotherapy. Under an ART workflow, we developed a predictive neural network (P-net) to predict the spatial distributions of tumors in the coming weeks utilizing images acquired earlier in the course. The three-step P-net consisted of a convolutional neural network to extract relevant features of the tumor and its environment, followed by a recurrence neural network constructed with gated recurrent units to analyze trajectories of tumor evolution in response to radiotherapy, and finally an attention model to weight the importance of weekly observations and produce the predictions. The performance of P-net was measured with Dice and root mean square surface distance (RMSSD) between the algorithm-predicted and experts-contoured tumors under a leave-one-out scheme.
Results: Tumor shrinkage was 60% ± 27% (mean ± standard deviation) by the end of radiotherapy across nine patients. Using images from the first three weeks, P-net predicted tumors on future weeks (4, 5, 6) with a Dice and RMSSD of (0.78 ± 0.22, 0.69 ± 0.24, 0.69 ± 0.26), and (2.1 ± 1.1 mm, 2.3 ± 0.8 mm, 2.6 ± 1.4 mm), respectively.
Conclusion: The proposed deep learning algorithm can capture and predict spatial and temporal patterns of tumor regression in a longitudinal imaging study. It closely follows the clinical workflow, and could facilitate the decision-making of ART. A prospective study including more patients is warranted.
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http://dx.doi.org/10.1002/mp.13765 | DOI Listing |
ACS Sens
January 2025
Department of Physics, Chalmers University of Technology, SE-41296 Göteborg, Sweden.
Rapidly detecting hydrogen leaks is critical for the safe large-scale implementation of hydrogen technologies. However, to date, no technically viable sensor solution exists that meets the corresponding response time targets under technically relevant conditions. Here, we demonstrate how a tailored long short-term transformer ensemble model for accelerated sensing (LEMAS) speeds up the response of an optical plasmonic hydrogen sensor by up to a factor of 40 and eliminates its intrinsic pressure dependence in an environment emulating the inert gas encapsulation of large-scale hydrogen installations by accurately predicting its response value to a hydrogen concentration change before it is physically reached by the sensor hardware.
View Article and Find Full Text PDFBrief Bioinform
November 2024
Center for Genomics and Biotechnology, Fujian Provincial Key Laboratory of Haixia Applied Plant Systems Biology, Haixia Institute of Science and Technology, Fujian Agriculture and Forestry University, No. 15 Shangxiadian Road, Cangshan District, Fuzhou 350002, China.
Spatial transcriptomics (ST) technologies enable dissecting the tissue architecture in spatial context. To perceive the global contextual information of gene expression patterns in tissue, the spatial dependence of cells must be fully considered by integrating both local and non-local features by means of spatial-context-aware. However, the current ST integration algorithm ignores for ST dropouts, which impedes the spatial-aware of ST features, resulting in challenges in the accuracy and robustness of microenvironmental heterogeneity detecting, spatial domain clustering, and batch-effects correction.
View Article and Find Full Text PDFInt J Surg
January 2025
Computer Science and Technology, Harbin Institute of Technology (Shenzhen), Shenzhen, China.
Detection of biomarkers of breast cancer incurs additional costs and tissue burden. We propose a deep learning-based algorithm (BBMIL) to predict classical biomarkers, immunotherapy-associated gene signatures, and prognosis-associated subtypes directly from hematoxylin and eosin stained histopathology images. BBMIL showed the best performance among comparative algorithms on the prediction of classical biomarkers, immunotherapy related gene signatures, and subtypes.
View Article and Find Full Text PDFHum Reprod Open
November 2024
Department of Medical Informatics, Faculty of Medicine, Mashhad University of Medical Sciences, Mashhad, Iran.
Study Question: How accurately can artificial intelligence (AI) models predict sperm retrieval in non-obstructive azoospermia (NOA) patients undergoing micro-testicular sperm extraction (m-TESE) surgery?
Summary Answer: AI predictive models hold significant promise in predicting successful sperm retrieval in NOA patients undergoing m-TESE, although limitations regarding variability of study designs, small sample sizes, and a lack of validation studies restrict the overall generalizability of studies in this area.
What Is Known Already: Previous studies have explored various predictors of successful sperm retrieval in m-TESE, including clinical and hormonal factors. However, no consistent predictive model has yet been established.
EClinicalMedicine
December 2024
Department of Pediatrics, Icahn School of Medicine at Mount Sinai, New York, NY, USA.
Background: Infant alertness and neurologic changes can reflect life-threatening pathology but are assessed by physical exam, which can be intermittent and subjective. Reliable, continuous methods are needed. We hypothesized that our computer vision method to track movement, pose artificial intelligence (AI), could predict neurologic changes in the neonatal intensive care unit (NICU).
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