Training deep neural networks with the error backpropagation algorithm is considered implausible from a biological perspective. Numerous recent publications suggest elaborate models for biologically plausible variants of deep learning, typically defining success as reaching around 98% test accuracy on the MNIST data set. Here, we investigate how far we can go on digit (MNIST) and object (CIFAR10) classification with biologically plausible, local learning rules in a network with one hidden layer and a single readout layer. The hidden layer weights are either fixed (random or random Gabor filters) or trained with unsupervised methods (Principal/Independent Component Analysis or Sparse Coding) that can be implemented by local learning rules. The readout layer is trained with a supervised, local learning rule. We first implement these models with rate neurons. This comparison reveals, first, that unsupervised learning does not lead to better performance than fixed random projections or Gabor filters for large hidden layers. Second, networks with localized receptive fields perform significantly better than networks with all-to-all connectivity and can reach backpropagation performance on MNIST. We then implement two of the networks - fixed, localized, random & random Gabor filters in the hidden layer - with spiking leaky integrate-and-fire neurons and spike timing dependent plasticity to train the readout layer. These spiking models achieve >98.2% test accuracy on MNIST, which is close to the performance of rate networks with one hidden layer trained with backpropagation. The performance of our shallow network models is comparable to most current biologically plausible models of deep learning. Furthermore, our results with a shallow spiking network provide an important reference and suggest the use of data sets other than MNIST for testing the performance of future models of biologically plausible deep learning.

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.neunet.2019.06.001DOI Listing

Publication Analysis

Top Keywords

biologically plausible
20
deep learning
16
hidden layer
16
local learning
12
readout layer
12
gabor filters
12
plausible deep
8
learning
8
learning shallow
8
models biologically
8

Similar Publications

Gene-level analysis reveals the genetic aetiology and therapeutic targets of schizophrenia.

Nat Hum Behav

January 2025

Department of Psychosomatics and Psychiatry, Zhongda Hospital, School of Medicine, Jiangsu Provincial Key Laboratory of Brain Science and Medicine, Advanced Institute for Life and Health, Southeast University, Nanjing, China.

Genome-wide association studies (GWASs) have reported multiple risk loci for schizophrenia (SCZ). However, the majority of the associations were from populations of European ancestry. Here we conducted a large-scale GWAS in Eastern Asian populations (29,519 cases and 44,392 controls) and identified ten Eastern Asian-specific risk loci, two of which have not been previously reported.

View Article and Find Full Text PDF

Background: Genetic variants that confer protection from Alzheimer's disease (AD) may be particularly critical in developing therapeutics. To target protective variant identification, we performed genetic association testing among selected individuals with whole genome sequencing (WGS) that remained alive and dementia-free beyond age 85 ("Wellderly").

Methods: We selected 1,873 White and Black Wellderly individuals with documented normal cognition beyond age 85 as determined by direct, in-person assessment with WGS from the NHLBI TOPMed project.

View Article and Find Full Text PDF

One Size Fits Small: The Narrow Utility for Plasma Metagenomics.

J Appl Lab Med

January 2025

Department of Laboratory Medicine and Pathology, Mayo Clinic, Phoenix, AZ, United States.

Metagenomic sequencing of plasma has been advertised by Karius, Inc. as a way to diagnose a variety of infectious syndromes. Due to the lack of robust evidence of clinical utility, our laboratory began actively stewarding Karius testing.

View Article and Find Full Text PDF

Ribosomes scanning from the mRNA 5' cap to the start codon may initiate at upstream open reading frames (uORFs), decreasing protein biosynthesis. Termination at a uORF can lead to re-initiation, where 40S subunits resume scanning and initiate another translation event downstream. The noncanonical translation factors MCTS1-DENR participate in re-initiation at specific uORFs, but knowledge of other trans-acting factors or uORF features influencing re-initiation is limited.

View Article and Find Full Text PDF

Ferroptosis plays a role in tumorigenesis by affecting lipid peroxidation and metabolic pathways; however, its prognostic or therapeutic relevance in pancreatic adenocarcinoma (PAAD) remains poorly understood. In this study, we developed a prognostic ferroptosis-related gene (FRG)-based risk model using cohorts of The Cancer Genome Atlas (TCGA) and the International Cancer Genome Consortium (ICGC), proposing plausible therapeutics. Differentially expressed FRGs between tumors from TCGA-PAAD and normal pancreatic tissues from Genotype-Tissue Expression were analyzed to construct a prognostic risk model using univariate and multivariate Cox regression and LASSO analyses.

View Article and Find Full Text PDF

Want AI Summaries of new PubMed Abstracts delivered to your In-box?

Enter search terms and have AI summaries delivered each week - change queries or unsubscribe any time!