is the only living representative species of Platysternidae and only three subspecies remain: , , and . However, previous reports implied that . . has distinct morphological and molecular features. The characterization of the mitogenome has been accepted as an efficient means of phylogenetic and evolutionary analysis. Hence, this study first determined the complete mitogenome of with the aim to identify the structure and variability of the mitogenome through comparative analysis. Furthermore, the phylogenetic relationship of the three subspecies was tested. Based on different tRNA gene loss and degeneration of these three subspecies, their rearrangement pathways have been inferred. Phylogenetic analysis showed that is a sister group to ( and ). Furthermore, the divergence time estimation of these three subspecies coincided with the uplift of the Tibetan Plateau. This study shows that the genetic distances between . . and the other two subspecies are comparable to interspecific genetic distances, for example within . In general, this study provides new and meaningful insights into the evolution of the three Platysternidae subspecies.
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http://dx.doi.org/10.3390/genes10070487 | DOI Listing |
BMC Plant Biol
January 2025
Shenzhen Branch, Guangdong Laboratory of Lingnan Modern Agriculture, Genome Analysis Laboratory of the Ministry of Agriculture and Rural Affairs, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, 518120, China.
Background: Toxic heavy metal elements in soils are major global environmental issues and easily migrate to crop grains to cause severe problems in human health, whereas moderately essential elements such as selenium are beneficial for human health. The accumulation of heavy metals and essential elements in rice grains and their genetic mechanisms are still poorly understood.
Results: We conducted genetic dissection of four toxic heavy metal elements (lead, cadmium, mercury, and chromium), one quasi metallic element (arsenic), and one essential element (selenium) in grains of 290 Xian and 308 Geng rice accessions through a genome-wide association study (GWAS) based on three statistical models and assays of element concentrations from three environments.
Int J Syst Evol Microbiol
January 2025
National Animal Disease Center, Agricultural Research Service, USDA, Ames, IA, USA.
Three novel strains within the genus (29887, 29892 and 29896) were isolated from healthy pigs during routine veterinary physical exams. All three strains were non-motile and non-spore-forming Gram-positive cocci. The complete genome of each strain was attained, and phylogenetic analyses were performed.
View Article and Find Full Text PDFMol Ecol
January 2025
Globe Institute, University of Copenhagen, Copenhagen, Denmark.
The Arctic environment plays a critical role in the global climate system and marine biodiversity. The region's ice-covered expanses provide essential breeding and feeding grounds for a diverse assemblage of marine species, who have adapted to thrive in these harsh conditions and consequently are under threat from global warming. The bearded seal (Erignathus barbatus), including two subspecies (E.
View Article and Find Full Text PDFbioRxiv
January 2025
Department of Biostatistics, Harvard T.H. Chan School of Public Health, Boston, MA, USA.
Genetic and genomic variation among microbial strains can dramatically influence their phenotypes and environmental impact, including on human health. However, inferential methods for quantifying these differences have been lacking. Strain-level metagenomic profiling data has several features that make traditional statistical methods challenging to use, including high dimensionality, extreme variation among samples, and complex phylogenetic relatedness.
View Article and Find Full Text PDFMol Phylogenet Evol
January 2025
Laboratorio de Herpetología and Museo de Zoología Alfonso L. Herrera, Departamento de Biología Evolutiva, Facultad de Ciencias, Universidad Nacional Autonoma de México, Ciudad Universitaria, Coyoacán C.P. 04510, CDMX, México. Electronic address:
The Lepidophyma sylvaticum complex occurs from west-central Nuevo León to the Sierra de Chiconquiaco in central Veracruz, Mexico. Morphological studies have revealed population groups that are "moderately divergent from each other" within the complex. In addition, a molecular phylogenetic study found L.
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