Nitrogen-fixing bacterial strain, designated B2, was isolated from methane-oxidation enrichment originating from a -dominated raised peatland in Tver region, Russia, and its phenotypic, chemotaxonomic and genomic characteristics were investigated. Cells of isolate were Gram-negative, aerobic, rod or spiral-shaped, with motility provided by a single polar flagellum in liquid media and peritrichous flagella on solid media. Strain was able to grow at 15-40 °C, pH 5.5-8.5 and tolerated NaCl to 2.0 % (w/v). Strain B2 gave positive amplification for dinitrogen reductase ( gene) and acetylene reduction activity was recorded up to 1250 nmol ethylene h (mg protein). Analysis of 16S rRNA showed that B2 represents a member of the genus and had the highest sequence similarity with SgZ-5 (97.92 %). The predominant quinone system was ubiquinone Q-10 and the major fatty acids were Cω7, Cω7 and C. The strain was facultative methylotrophic and used methanol and formate for the growth. Genome sequencing revealed a genome size of 8.0 Mbp and a G+C content of 67.8 mol%. The aFI genes encoding methanol dehydrogenase were absent, but a homologous F gene was detected. The genes encoding enzymes involved in the biosynthesis of tetrahydromethanopterin (HMPT) (formaldehyde oxidation) and NAD-linked formate dehydrogenase () were identified. Pairwise determined whole genome average nucleotide identity (gANI) values confirmed that strain B2 represents a novel species, for which we propose the name sp. nov. with the type strain B2 (VKM B-3233, КСТС 62613).

Download full-text PDF

Source
http://dx.doi.org/10.1099/ijsem.0.003560DOI Listing

Publication Analysis

Top Keywords

genes encoding
8
strain
6
nov methylotrophic
4
methylotrophic nitrogen-fixing
4
nitrogen-fixing species
4
species isolated
4
isolated raised
4
raised bog
4
bog nitrogen-fixing
4
nitrogen-fixing bacterial
4

Similar Publications

Emergence and polyclonal dissemination of NDM-5/OXA-181 carbapenemase-producing Escherichia coli in the French Indian Ocean territories.

Ann Clin Microbiol Antimicrob

January 2025

Laboratoire de Bactériologie, CHU Félix Guyon, Allée des Topazes, 97400, Saint-Denis, La Réunion, France.

Aim: Located in the Southwest Indian Ocean area (SIOA), the two French overseas territories (FOTs) of Reunion and Mayotte islands are heavily impacted by antimicrobial resistance. The aim of this study was to investigate all cases of NDM-5 and OXA-181 carbapenemase-producing Escherichia coli (CPEc) in these two FOTs between 2015 and 2020, to better understand the regional spread of these last-line treatment resistant bacteria.

Methods: All E.

View Article and Find Full Text PDF

Fine-tuning gibberellin improves rice alkali-thermal tolerance and yield.

Nature

January 2025

Shanghai Collaborative Innovation Center of Agri-Seeds, Joint Center for Single Cell Biology, School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai, China.

Soil alkalinization and global warming are predicted to pose major challenges to agriculture in the future, as they continue to accelerate, markedly reducing global arable land and crop yields. Therefore, strategies for future agriculture are needed to further improve globally cultivated, relatively high-yielding Green Revolution varieties (GRVs) derived from the SEMIDWARF 1 (SD1) gene. Here we propose that precise regulation of the phytohormone gibberellin (GA) to optimal levels is the key to not only confer alkali-thermal tolerance to GRVs, but also to further enhance their yield.

View Article and Find Full Text PDF

Loss-of-function mutations induced by CRISPR-Cas9 in the TaGS3 gene homoeologs show non-additive dosage-dependent effects on grain size and weight and have potential utility for increasing grain yield in wheat. The grain size in cereals is one of the component traits contributing to yield. Previous studies showed that loss-of-function (LOF) mutations in GS3, encoding Gγ subunit of the multimeric G protein complex, increase grain size and weight in rice.

View Article and Find Full Text PDF

Effective modulation of gene expression in plants is achievable through tools like CRISPR and RNA interference, yet methods for directly modifying endogenous proteins remain lacking. Here, we identify the E3 ubiquitin ligase E3TCD1 and develope a Targeted Condensation-prone-protein Degradation (TCD) strategy. The X-E3TCD1 fusion protein acts as a genetically engineered degrader, selectively targeting endogenous proteins prone to condensation.

View Article and Find Full Text PDF

Cells preserve and convey certain gene expression patterns to their progeny through the mechanism called epigenetic memory. Epigenetic memory, encoded by epigenetic markers and components, determines germline inheritance, genomic imprinting, and X chromosome inactivation. First discovered long non coding RNAs were implicated in genomic imprinting and X-inactivation and these two phenomena clearly demonstrate the role of lncRNAs in epigenetic memory regulation.

View Article and Find Full Text PDF

Want AI Summaries of new PubMed Abstracts delivered to your In-box?

Enter search terms and have AI summaries delivered each week - change queries or unsubscribe any time!