is a widely acting transcription factor and its deregulation is a crucial event in many human cancers. is important biologically and clinically in multiple myeloma, but the mechanisms underlying its dysregulation are poorly understood. We show that rearrangements are present in 36.0% of newly diagnosed myeloma patients, as detected in the largest set of next generation sequencing data to date (n=1,267). Rearrangements were complex and associated with increased expression of and , but not other genes at 8q24. The highest effect on gene expression was detected in cases where the locus is juxtaposed next to super-enhancers associated with genes such as and We identified three hotspots of recombination at 8q24, one of which is enriched for translocations. Breakpoint analysis indicates primary myeloma rearrangements involving the locus occur through non-homologous end joining, whereas secondary rearrangements occur through microhomology-mediated end joining. This mechanism is different to lymphomas, where non-homologous end joining generates rearrangements. Rearrangements resulted in overexpression of key genes and chromatin immunoprecipitation-sequencing identified that , a member of the glucose metabolism pathway, is directly over-expressed through binding of at its promoter.
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http://dx.doi.org/10.3324/haematol.2019.217927 | DOI Listing |
J Hazard Mater
December 2024
Wise Laboratory for Environmental and Genetic Toxicology, Department of Pharmacology and Toxicology, University of Louisville, 500 S Preston Street, Building 55A, Room 1422, Louisville, KY 40292, United States. Electronic address:
Hexavalent chromium [Cr(VI)] is a human lung carcinogen with widespread exposure. How Cr(VI) causes cancer is poorly understood, but chromosome instability plays a central role. Inhibition of DNA repair pathways leads to chromosome instability; however, despite the importance of these pathways in the mechanism of Cr(VI)-induced lung carcinogenesis, there are no data considering in-depth analysis on the transcriptional changes of genes involved in them.
View Article and Find Full Text PDFNucleic Acids Res
December 2024
Baylor College of Medicine, Department of Molecular and Human Genetics, One Baylor Plaza, Houston, TX 77030, USA.
Formation of templated insertions at DNA double-strand breaks (DSBs) is very common in cancer cells. The mechanisms and enzymes regulating these events are largely unknown. Here, we investigated templated insertions in yeast at DSBs using amplicon sequencing across a repaired locus.
View Article and Find Full Text PDFPlant Cell
December 2024
State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing 100193, China.
Plant J
December 2024
Institut de biologie moléculaire des plantes du CNRS, 12 rue du Général Zimmer, 67000, Strasbourg, France.
Am J Hum Genet
December 2024
Center for Genomic Medicine, Massachusetts General Hospital, Boston, MA 02114, USA; Program in Medical and Population Genetics, Broad Institute of MIT and Harvard, Cambridge, MA 02142, USA; Department of Neurology, Massachusetts General Hospital and Harvard Medical School, Boston, MA 02115, USA; Stanley Center for Psychiatric Research, Broad Institute of MIT and Harvard, Cambridge, MA 02142, USA. Electronic address:
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