AI Article Synopsis

  • Tick evasins (EVAs) are proteins that bind to chemokines to reduce inflammation, and their binding mechanisms exhibit a promiscuous nature, potentially making them valuable for treating inflammatory diseases.
  • Research led to the discovery of 27 new CXC-chemokine-binding evasins, which were categorized into two groups based on their binding capabilities, either binding exclusively to ELR CXC-chemokines or both ELR and non-ELR types.
  • The study revealed the structure of EVA3, highlighting a unique scaffold that plays a key role in its ability to bind different chemokines, and indicated that variations in certain segments of this scaffold can influence the specificity

Article Abstract

Tick evasins (EVAs) bind either CC- or CXC-chemokines by a poorly understood promiscuous or "one-to-many" mechanism to neutralize inflammation. Because EVAs potently inhibit inflammation in many preclinical models, highlighting their potential as biological therapeutics for inflammatory diseases, we sought to further unravel the CXC-chemokine-EVA interactions. Using yeast surface display, we identified and characterized 27 novel CXC-chemokine-binding evasins homologous to EVA3 and defined two functional classes. The first, which included EVA3, exclusively bound ELR CXC-chemokines, whereas the second class bound both ELR and ELR CXC-chemokines, in several cases including CC-motif chemokine ligand 10 (CXCL10) but, surprisingly, not CXCL8. The X-ray crystal structure of EVA3 at a resolution of 1.79 Å revealed a single antiparallel β-sheet with six conserved cysteine residues forming a disulfide-bonded knottin scaffold that creates a contiguous solvent-accessible surface. Swapping analyses identified distinct knottin scaffold segments necessary for different CXC-chemokine-binding activities, implying that differential ligand positioning, at least in part, plays a role in promiscuous binding. Swapping segments also transferred chemokine-binding activity, resulting in a hybrid EVA with dual CXCL10- and CXCL8-binding activities. The solvent-accessible surfaces of the knottin scaffold segments have distinctive shape and charge, which we suggest drives chemokine-binding specificity. These studies provide structural and mechanistic insight into how CXC-chemokine-binding tick EVAs achieve class specificity but also engage in promiscuous binding.

Download full-text PDF

Source
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6643034PMC
http://dx.doi.org/10.1074/jbc.RA119.008817DOI Listing

Publication Analysis

Top Keywords

knottin scaffold
16
tick evasins
8
bound elr
8
elr cxc-chemokines
8
scaffold segments
8
promiscuous binding
8
knottin
4
scaffold directs
4
cxc-chemokine-binding
4
directs cxc-chemokine-binding
4

Similar Publications

Development and Synthesis of Bombesin-Based Radiopharmaceutical Precursors Modified with Knottin.

Sovrem Tekhnologii Med

November 2024

DSc, Leading Researcher, Laboratory for Peptide Drugs and Vaccines Development, S.P. Kapitsa Research Institute of Technology; Ulyanovsk State University, 42 Leo Tolstoy St., Ulyanovsk, 432017, Russia.

Unlabelled: Bombesin receptors on the cell surface are of great interest as a target for targeted cancer therapy. One of the strategies of targeting bombesin receptors involves the use of tropic short peptides. However, the main limitation for the wide application of peptides as drugs is their low stability due to their sensitivity to extreme conditions of the internal body environment such as temperature and action of enzymes.

View Article and Find Full Text PDF

Background: The identification of novel toxins from overlooked and taxonomically exceptional species bears potential for various pharmacological applications. The remipede Xibalbanus tulumensis, an underwater cave-dwelling crustacean, is the only crustacean for which a venom system has been described. Its venom contains several xibalbin peptides that have an inhibitor cysteine knot (ICK) scaffold.

View Article and Find Full Text PDF

From genome to proteome: Comprehensive identification of venom toxins from the Chinese funnel-web spider (Macrothelidae: Macrothele yani).

Int J Biol Macromol

May 2024

Yunnan Provincial Key Laboratory of Entomological Biopharmaceutical R & D, Dali University, Dali 671000, China; National-Local Joint Engineering Research Center of Entomoceutics, Dali University, Dali 671000, China; Innovative Team of Dali University for Medicinal Insects & Arachnids Resources Digital Development, Dali 671000, China. Electronic address:

Article Synopsis
  • * This study assembled the high-quality genome of Macrothele yani, totaling 6.79 Gb with over 39,000 annotated protein-coding genes, making it the spider genome with the highest gene count so far.
  • * The research identified 194 venom toxins through advanced techniques, enhancing our understanding of these compounds' potential in medicine and agriculture, while also providing a crucial genomic resource for future studies on spider biology.
View Article and Find Full Text PDF

Stabilizing Scaffold for Short Peptides Based on Knottins.

Curr Cancer Drug Targets

September 2024

Laboratory of Research and Development of Peptide Drugs and Vaccines, S.P. Kapitsa Technological Research Institute, Ulyanovsk State University, Ulyanovsk, Russia.

Background: Bombesin (BBN) is a short peptide with a high affinity for receptors that are expressed on the surface of various types of cancer cells. However, a full length BBN molecule has low stability.

Objective: In our study, we propose the use of peptide toxins, derived from animal and plant toxins, as scaffold molecules to enhance the bioavailability and stability of bombesin.

View Article and Find Full Text PDF

Extensive application of technologies like phage display in screening peptide and protein combinatorial libraries has not only facilitated creation of new recombinant antibodies but has also significantly enriched repertoire of the protein binders that have polypeptide scaffolds without homology to immunoglobulins. These innovative synthetic binding protein (SBP) platforms have grown in number and now encompass monobodies/adnectins, DARPins, lipocalins/anticalins, and a variety of miniproteins such as affibodies and knottins, among others. They serve as versatile modules for developing complex affinity tools that hold promise in both diagnostic and therapeutic settings.

View Article and Find Full Text PDF

Want AI Summaries of new PubMed Abstracts delivered to your In-box?

Enter search terms and have AI summaries delivered each week - change queries or unsubscribe any time!