Optimization of DNA Extraction from Individual Sand Flies for PCR Amplification.

Methods Protoc

Centro Regional de Estudios Genómicos, Facultad de Ciencias Exactas, Universidad Nacional de La Plata, La Plata 1900, Argentina.

Published: May 2019

AI Article Synopsis

  • Traditional methods for extracting DNA from small sand flies often result in low yield and purity, which is a challenge for large-scale analysis.
  • Modifications to an existing protocol, particularly the use of a new lysis buffer (buffer TESCa) containing calcium, showed potential to improve the efficiency of DNA extraction.
  • This study is notable as it is the first to utilize a calcium-based lysis buffer for extracting DNA from sand flies, leading to successful amplification of the target gene.

Article Abstract

Numerous protocols have been published for extracting DNA from phlebotomines. Nevertheless, their small size is generally an issue in terms of yield, efficiency, and purity, for large-scale individual sand fly DNA extractions when using traditional methods. Even though this can be circumvented with commercial kits, these are generally cost-prohibitive for developing countries. We encountered these limitations when analyzing field-collected spp. by polymerase chain reaction (PCR) and, for this reason, we evaluated various modifications on a previously published protocol, the most significant of which was a different lysis buffer that contained Ca (buffer TESCa). This ion protects proteinase K against autolysis, increases its thermal stability, and could have a regulatory function for its substrate-binding site. Individual sand fly DNA extraction success was confirmed by amplification reactions using internal control primers that amplify a fragment of the gene. To the best of our knowledge, this is the first time a lysis buffer containing Ca has been reported for the extraction of DNA from sand flies.

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Source
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6632178PMC
http://dx.doi.org/10.3390/mps2020036DOI Listing

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