Clustering white matter (WM) tracts from diffusion tensor imaging (DTI) is primarily important for quantitative analysis on pediatric brain development. A recently developed algorithm, density peaks (DP) clustering, demonstrates great robustness to the complex structural variations of WM tracts without any prior templates. Nevertheless, the calculation of densities, the core step of DP, is time consuming especially when the number of WM fibers is huge. In this paper, we propose a fast algorithm that accelerates the density computation about 50 times over the original one. We convert the global calculation for the density as well as critical parameter in the process into local computations, and develop a binary tree structure to orderly store the neighbors for these local computations. Hence, the density computation turns out to be a direct access of the structure, rendering significantly computational saving. Performing experiments on synthetic point data and the JHU-DTI data set and comparing results of our fast DP algorithm and existing clustering methods, we can validate the efficiency and effectiveness of our fast DP algorithm. Finally, we demonstrate the application of the proposed algorithm on the analysis of pediatric WM tract development.
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http://dx.doi.org/10.1016/j.artmed.2019.03.002 | DOI Listing |
Int J Cardiol
January 2025
Essex Cardiothoracic Centre, Basildon, Essex, SS16 5NL, United Kingdom; Anglia Ruskin School of Medicine & MTRC, Anglia Ruskin University, Chelmsford, Essex CM1 1SQ, United Kingdom.
Introduction: Transcatheter aortic valve replacement (TAVR) is increasingly in demand for treating severe aortic stenosis in a variety of surgical risk profiles. This means increasing wait times and elevated morbidity and mortality on the waitlist. To address this, we developed the SWIFT TAVR algorithm to prioritize patients based on clinical risk and reduce wait times.
View Article and Find Full Text PDFPhys Eng Sci Med
January 2025
Faculty of Engineering, Department of Biomedical Engineering, Universiti Malaya, Kuala Lumpur, Malaysia.
Neointimal coverage and stent apposition, as assessed from intravascular optical coherence tomography (IVOCT) images, are crucial for optimizing percutaneous coronary intervention (PCI). Existing state-of-the-art computer algorithms designed to automate this analysis often treat lumen and stent segmentations as separate target entities, applicable only to a single stent type and overlook automation of preselecting which pullback segments need segmentation, thus limit their practicality. This study aimed for an algorithm capable of intelligently handling the entire IVOCT pullback across different phases of PCI and clinical scenarios, including the presence and coexistence of metal and bioresorbable vascular scaffold (BVS), stent types.
View Article and Find Full Text PDFDiscov Med (Cham)
December 2024
Department of Engineering in the Faculty of Science, Thompson Rivers University, 805 TRU Way, Kamloops, BC V2C 0C8 Canada.
Cardiovascular diseases are a major cause of mortality and morbidity. Fast detection of life-threatening emergency events and an earlier start of the therapy would save many lives and reduce successive disabilities. Understanding the specific risk factors associated with heart attack and the degree of association is crucial in the clinical diagnosis.
View Article and Find Full Text PDFJ Cheminform
January 2025
PROMOCS Laboratory, Department of Chemistry and Chemical Technologies, University of Calabria, Arcavacata di Rende (CS), Italy.
Effective light-based cancer treatments, such as photodynamic therapy (PDT) and photoactivated chemotherapy (PACT), rely on compounds that are activated by light efficiently, and absorb within the therapeutic window (600-850 nm). Traditional prediction methods for these light absorption properties, including Time-Dependent Density Functional Theory (TDDFT), are often computationally intensive and time-consuming. In this study, we explore a machine learning (ML) approach to predict the light absorption in the region of the therapeutic window of platinum, iridium, ruthenium, and rhodium complexes, aiming at streamlining the screening of potential photoactivatable prodrugs.
View Article and Find Full Text PDFNat Commun
January 2025
Key Laboratory of Healthy Mariculture for the East China Sea, Ministry of Agriculture and Rural Affairs & Fisheries college, Jimei University, Xiamen, Fujian, People's Republic of China.
Deep phenotyping can enhance the power of genetic analysis, including genome-wide association studies (GWAS), but the occurrence of missing phenotypes compromises the potential of such resources. Although many phenotypic imputation methods have been developed, the accurate imputation of millions of individuals remains challenging. In the present study, we have developed a multi-phenotype imputation method based on mixed fast random forest (PIXANT) by leveraging efficient machine learning (ML)-based algorithms.
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