AnABlast: Re-searching for Protein-Coding Sequences in Genomic Regions.

Methods Mol Biol

Facultad de Ciencias Experimentales (Área de Genética), Centro Andaluz de Biología del Desarrollo (CABD, UPO-CSIC), Universidad Pablo de Olavide, Sevilla, Spain.

Published: August 2019

AnABlast is a computational tool that highlights protein-coding regions within intergenic and intronic DNA sequences which escape detection by standard gene prediction algorithms. DNA sequences with small protein-coding genes or exons, complex intron-containing genes, or degenerated DNA fragments are efficiently targeted by AnABlast. Furthermore, this algorithm is particularly useful in detecting protein-coding sequences with nonsignificant homologs to sequences in databases. AnABlast can be executed online at http://www.bioinfocabd.upo.es/anablast/ .

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http://dx.doi.org/10.1007/978-1-4939-9173-0_12DOI Listing

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