Hidden Markov Model-Based Smart Annotation for Benchmark Cyclic Activity Recognition Database Using Wearables.

Sensors (Basel)

Machine Learning and Data Analytics Lab, Computer Science Department, 91052 Erlangen, Germany.

Published: April 2019

Activity monitoring using wearables is becoming ubiquitous, although accurate cycle level analysis, such as step-counting and gait analysis, are limited by a lack of realistic and labeled datasets. The effort required to obtain and annotate such datasets is massive, therefore we propose a smart annotation pipeline which reduces the number of events needing manual adjustment to 14%. For scenarios dominated by walking, this annotation effort is as low as 8%. The pipeline consists of three smart annotation approaches, namely edge detection of the pressure data, local cyclicity estimation, and iteratively trained hierarchical hidden Markov models. Using this pipeline, we have collected and labeled a dataset with over 150,000 labeled cycles, each with 2 phases, from 80 subjects, which we have made publicly available. The dataset consists of 12 different task-driven activities, 10 of which are cyclic. These activities include not only straight and steady-state motions, but also transitions, different ranges of bouts, and changing directions. Each participant wore 5 synchronized inertial measurement units (IMUs) on the wrists, shoes, and in a pocket, as well as pressure insoles and video. We believe that this dataset and smart annotation pipeline are a good basis for creating a benchmark dataset for validation of other semi- and unsupervised algorithms.

Download full-text PDF

Source
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6515106PMC
http://dx.doi.org/10.3390/s19081820DOI Listing

Publication Analysis

Top Keywords

smart annotation
16
hidden markov
8
annotation pipeline
8
annotation
5
markov model-based
4
smart
4
model-based smart
4
annotation benchmark
4
benchmark cyclic
4
cyclic activity
4

Similar Publications

Chromosome-level genome assembly of Salvia sclarea.

Sci Data

January 2025

Department of Crop Science, Chungnam National University, Daejeon, 34134, Korea.

Salvia sclarea is a medicinal herb from the Lamiaceae family, valued for its essential oil which contains sclareol, linalool, linalyl acetate, and other compounds. Despite its extensive use, the genetic mechanisms of S. sclarea are not well understood.

View Article and Find Full Text PDF

Pseudolabel guided pixels contrast for domain adaptive semantic segmentation.

Sci Rep

December 2024

The Key Laboratory of Smart Manufacturing in Energy Chemical Process, Ministry of Education, East China University of Science and Technology, Shanghai, 200237, China.

Semantic segmentation is essential for comprehending images, but the process necessitates a substantial amount of detailed annotations at the pixel level. Acquiring such annotations can be costly in the real-world. Unsupervised domain adaptation (UDA) for semantic segmentation is a technique that uses virtual data with labels to train a model and adapts it to real data without labels.

View Article and Find Full Text PDF

Understanding the triacylglycerol-based carbon anabolic differentiation in Cyperus esculentus and Cyperus rotundus developing tubers via transcriptomic and metabolomic approaches.

BMC Plant Biol

December 2024

College of Agronomy and Biotechnology, Key Laboratory for Crop Production and Smart Agriculture of Yunnan Province, Yunnan Agricultural University, Kunming, 650201, China.

Background: Yellow nutsedge (Cyperus esculentus, known as 'YouShaDou' in China, YSD) and purple nutsedge (Cyperus rotundus, known as 'XiangFuZi' in China, XFZ), closely related Cyperaceae species, exhibit significant differences in triacylglycerol (TAG) accumulation within their tubers, a key factor in carbon flux repartitioning that highly impact the total lipid, carbohydrate and protein metabolisms. Previous studies have attempted to elucidate the carbon anabolic discrepancies between these two species, however, a lack of comprehensive genome-wide annotation has hindered a detailed understanding of the underlying molecular mechanisms.

Results: This study utilizes transcriptomic analyses, supported by a comprehensive YSD reference genome, and metabolomic profiling to uncover the mechanisms underlying the major carbon perturbations between the developing tubers of YSD and XFZ germplasms harvested in Yunnan province, China, where the plant biodiveristy is renowned worldwide and may contain more genetic variations relative to their counterparts in other places.

View Article and Find Full Text PDF

The Rice Online Expression Profiles Array Database Version 2 (ROADv2): An Interactive Atlas for Rice Functional Genomics.

Rice (N Y)

December 2024

Graduate School of Green-Bio Science and Crop Biotech Institute, Kyung Hee University, Yongin, 17104, Republic of Korea.

The Rice Online expression profiles Array Database version 2 (ROADv2; https://roadv2.khu.ac.

View Article and Find Full Text PDF

Objectives: The accurate identification of Emergency Department (ED) encounters involving opioid misuse is critical for health services, research, and surveillance. We sought to develop natural language processing (NLP)-based models for the detection of ED encounters involving opioid misuse.

Methods: A sample of ED encounters enriched for opioid misuse was manually annotated and clinical notes extracted.

View Article and Find Full Text PDF

Want AI Summaries of new PubMed Abstracts delivered to your In-box?

Enter search terms and have AI summaries delivered each week - change queries or unsubscribe any time!