Studies show that can denitrify nitrogen sources under aerobic conditions. However, the lack of data on its genome sequence has restricted molecular studies and practical applications. In this study, the complete genome of ATCC 19367 was sequenced and its nitrogen metabolism properties were characterized. The size of the whole genome is 5 242 327 bp, with two chromosomes and one plasmid. The average G + C content is 66.8%, and it contains 5308 protein-coding genes, 54 tRNA genes, and nine rRNA operons. Among the protein-coding genes, 71.35% could be assigned to the Gene Ontology (GO) pathway, 86.66% to the Clusters of Orthologous Groups (COG) pathway, and 50.57% to the Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway. Comparative genome analysis between ATCC 19367 and PD1222 revealed that there are 428 genes specific to ATCC 19367 and 4738 core genes. Furthermore, the expression of genes related to denitrification, biofilm formation, and nitrogen metabolism (, , and ) by ATCC 19367 under aerobic conditions was affected by incubation time and shaking speed. This study elucidates the genomic background of ATCC 19367 and suggests the possibility of controlling nitrogen pollution in the environment by using this bacterium.
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http://dx.doi.org/10.1139/cjm-2019-0037 | DOI Listing |
Bioresour Technol
December 2022
Guangdong Provincial Key Laboratory of Veterinary Pharmaceutics Development and Safety Evaluation, South China Agricultural University, Guangzhou, PR China. Electronic address:
Paracoccus denitrificans can adapt to complex environmental changes and sRNAs play crucial roles during this process. This work aim to identify antibiotic-induced sRNA that regulated denitrification and explored its potential for functional enhancement of this process. Target prediction indicated complementary base pairing between the denitrifying gene nosZ and the sRNA Pda200.
View Article and Find Full Text PDFCan J Microbiol
July 2019
b Key Laboratory for Marine Estuary Fishery Resources Protection of Yangjiang, Department of Food and Environmental Engineering, Yangjiang Polytechnic, Yangjiang, 529566, People's Republic of China.
Studies show that can denitrify nitrogen sources under aerobic conditions. However, the lack of data on its genome sequence has restricted molecular studies and practical applications. In this study, the complete genome of ATCC 19367 was sequenced and its nitrogen metabolism properties were characterized.
View Article and Find Full Text PDFIndian J Microbiol
June 2015
Fermentation Technology-Natural Products Department, Piramal Enterprises Ltd., 1 Nirlon Complex, Off Western Express Highway, Goregaon (East), Mumbai, 400063 India.
Coenzyme Q10 (CoQ10) is a blockbuster nutraceutical molecule which is often used as an oral supplement in the supportive therapy for cardiovascular diseases, cancer and neurodegenerative diseases. It is commercially produced by fermentation process, hence constructing the high yielding CoQ10 producing strains is a pre-requisite for cost effective production. Paracoccus denitrificans ATCC 19367, a biochemically versatile organism was selected to carry out the studies on CoQ10 yield improvement.
View Article and Find Full Text PDFAppl Environ Microbiol
February 2014
Geomicrobiology, Center for Applied Geosciences, University of Tuebingen, Tuebingen, Germany.
Microorganisms have been observed to oxidize Fe(II) at neutral pH under anoxic and microoxic conditions. While most of the mixotrophic nitrate-reducing Fe(II)-oxidizing bacteria become encrusted with Fe(III)-rich minerals, photoautotrophic and microaerophilic Fe(II) oxidizers avoid cell encrustation. The Fe(II) oxidation mechanisms and the reasons for encrustation remain largely unresolved.
View Article and Find Full Text PDFEnviron Toxicol Chem
September 2003
Group of Environmental Microbiology, Instituto del Agua, Universidad de Granada, Granada, Spain.
The effects of the application of eight pesticides (aldrin, lindane, dimetoate, methylparathion, methidation, atrazine, simazine, and captan) on growth, respiratory activity (as CO2 production), denitrifying activity (as N2O released), and nitrite accumulation in the culture medium by Paracoccus denitrificans strain ATCC 19367 were studied. The fungicide captan totally inhibited growth and biological activity of P. denitrificans, while the rest of the tested pesticides delayed the growth and CO2 release of P.
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