Pushing the limits of concertedness. A waltz of wandering carbocations.

Chem Sci

Department of Chemistry , University of California, One Shields Ave , Davis , CA 95616 , USA . Email:

Published: February 2019

AI Article Synopsis

  • The text discusses "triple shift" reactions involving a sequence of three 1,-shifts in terpene-forming carbocation processes, highlighting their unexpected nature and significance in biosynthesis.
  • Researchers aimed to explore the limits of these reactions by designing systems for potential quadruple and pentuple shifts, though clear examples weren't achieved.
  • They found that reactions led to flat energy landscapes with over five chemical events connecting reactants to products, and molecular dynamics simulations revealed rapid interchanges of structures, indicating a complex pathway to structural diversity.

Article Abstract

Among the array of complex terpene-forming carbocation cyclization/rearrangement reactions, the so-called "triple shift" reactions are among the most unexpected. Such reactions involve the asynchronous combination of three 1,-shifts into a concerted process, , a 1,2-alkyl shift followed by a 1,3-hydride shift followed by a second 1,2-alkyl shift. This type of reaction so far has been proposed to occur during the biosynthesis of diterpenes and the sidechains of sterols. Here we describe efforts to push the limits of concertedness in this type of carbocation reaction by designing, and characterizing with quantum chemical computations, systems that could couple additional 1,-shift events to a triple shift leading, in principle to quadruple, pentuple, shifts. While our designs did not lead to clear-cut examples of quadruple, shifts, they did lead to reactions with surprisingly flat energy surfaces where more than five chemical events connect reactants and plausible products. molecular dynamics simulations demonstrate that the formal minima on these surfaces interchange on short timescales, both with each other and with additional unexpected structures, allowing us a glimpse into a very complex manifold that allows ready access to great structural diversity.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6385557PMC
http://dx.doi.org/10.1039/c8sc03567aDOI Listing

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Article Synopsis
  • The text discusses "triple shift" reactions involving a sequence of three 1,-shifts in terpene-forming carbocation processes, highlighting their unexpected nature and significance in biosynthesis.
  • Researchers aimed to explore the limits of these reactions by designing systems for potential quadruple and pentuple shifts, though clear examples weren't achieved.
  • They found that reactions led to flat energy landscapes with over five chemical events connecting reactants to products, and molecular dynamics simulations revealed rapid interchanges of structures, indicating a complex pathway to structural diversity.
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Computational Mechanistic Study of Thionation of Carbonyl Compounds with Lawesson's Reagent.

J Org Chem

September 2016

Laboratorio de Síntesis Asimétrica, Instituto de Síntesis Quimica y Catalisis Homogenea (ISQCH), Universidad de Zaragoza-CSIC , Zaragoza 50009, Spain.

The thionation reaction of carbonyl compounds with Lawesson's reagent (LR) has been studied using density functional theory methods and topological analyses. After dissociation of LR, the reaction takes place through a two-step mechanism involving (i) a concerted cycloaddition between one monomer and the carbonyl compound to form a four-membered intermediate and (ii) a cycloreversion leading to the thiocarbonyl derivative and phenyl(thioxo)phosphine oxide. Topological analyses confirmed the concertedness and asynchronicity of the process.

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The kinetic time course of citrate-induced activation and polymerization (into filaments) of the protomeric form of acetyl-CoA carboxylase were compared to assess the concertedness of the two processes. Rapid-quench techniques were employed to measure the kinetics of activation of the carboxylase-catalyzed reaction by citrate. When enzyme was preincubated with citrate prior to initiating the steady state turnover reaction with acetyl-CoA in the rapid-quench device, the observed rate of carboxylation of acetyl-CoA was apparently linear from the moment of mixing.

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The kinetics of citrate-induced activation and polymerization (into filaments) of the 450,000-dalton protomeric form of acetyl-CoA carboxylase were compared to assess the concertedness of the two processes. Rapid-quench techniques were employed to measure the time course of activation by citrate of the carboxylase-catalyzed reaction. When enzyme was preincubated with citrate prior to initiating the steady state turnover reaction with acetyl-CoA in the rapid-quench device, the observed rate of carboxylation of acetyl-CoA was apparently linear from the moment of mixing.

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