Lipooligosaccharides (LOS), composed of hydrophilic oligosaccharides and hydrophobic lipid A domains, are found on the outer membranes of Gram-negative bacteria. Here we report the characterization of deacylated LOS of LPS by activated-electron photodetachment mass spectrometry. Collision induced dissociation (CID) of these phosphorylated oligosaccharides produces simple MS/MS spectra with most fragment ions arising from cleavages near the reducing end of the molecule where the phosphate groups are located. In contrast, 193 nm ultraviolet photodissociation (UVPD) generates a wide array of product ions throughout the oligosaccharide including cross-ring fragments that illuminate the branching patterns. However, there are also product ions that are redundant or uninformative, resulting in more congested spectra that complicate interpretation. In this work, a hybrid UVPD-CID approach known as activated-electron photodetachment (a-EPD) affords less congested spectra than UVPD alone and richer fragmentation patterns than CID alone. a-EPD combines UVPD of negatively charged oligosaccharides to yield abundant charge-reduced radical ions which are subsequently interrogated by collisional activation. CID of the charge-reduced precursors results in extensive fragmentation throughout the backbone of the oligosaccharide. This hybridized a-EPD approach was employed to characterize the structure and branching pattern of deacylated LOS of E. coli.
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http://dx.doi.org/10.1021/acs.analchem.9b00048 | DOI Listing |
Sci Rep
December 2024
Department of Biotechnology, Faculty of Agro-industry, Kasetsart University, Bangkok, 10900, Thailand.
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December 2024
Facultad de Ingeniería Química, Universidad Autónoma de Yucatán, Periférico Norte Km. 33.5, Tablaje Catastral 13615, Col. Chuburná de Hidalgo Inn, Mérida, 97203, Yucatán, México.
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December 2024
Department of Gastroenterology, Renmin Hospital of Wuhan University, 99 Zhangzhidong Road, Wuhan, 430060, Hubei Province, China.
Helicobacter pylori (H. pylori) is one of the most globally prevalent bacteria, closely associated with gastrointestinal diseases such as gastric ulcers and chronic gastritis. Current clinical methods primarily involve Carbon-13 and Carbon-14 urea breath test, both carrying potential safety risks.
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December 2024
Division of Zoonosis Research, National Institute of Animal Health, National Agriculture and Food Research Organization, Tsukuba, Ibaraki, Japan.
Salmonella enterica serovar 4,[5],12:i:- sequence type 34 (ST34) has recently become a global concern for public and animal health. The acquisition of mobile genetic element ICEmST, which contains two copper tolerance gene clusters, cus and pco, influences the epidemic success of this clone. Copper is used as a feed additive in swine at levels that potentially lead to selection pressure for Enterobacteriaceae; however, it remains unclear whether the copper tolerance system of ICEmST functions in vivo.
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December 2024
Department of Chemistry and Food Toxicology, Institute of Food Technology and Nutrition, University of Rzeszow, Ćwiklińskiej 1a St, Rzeszow, 35-601, Poland.
The aim of the present study was to compare the antioxidant, antibacterial and antiviral activities of Podkarpackie coniferous honeydew honey and Manuka honey. The quality of tested honey samples (honeydew-12 and Manuka-4) regarding honey standard was evaluated as well as additional indicators (methylglyoxal, total phenolics and HPTLC phenolic profile, antioxidant potential, glucose oxidase activity, and hydrogen peroxide) were compared. Antibacterial potential was analyzed against Gram-positive (S.
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