Pauli repulsion is a key component of any theory of intermolecular interactions. Although Pauli or exchange repulsion has its origin in the quantum mechanical nature of electrons, it is possible to describe the resulting energetic effects via a classical model in terms of the overlap of electron densities. In fact, closed shell intermolecular repulsion can be explained as a diminution of election density in the internuclear region resulting in decreased screening of nuclear charges and increased nuclear-nuclear repulsion. We provide a concise anisotropic repulsion formulation using the atomic multipoles from the Atomic Multipole Optimized Energetics for Biomolecular Applications force field to describe the electron density at each atom in a larger system. Mathematically, the proposed model consists of damped pairwise exponential multipolar repulsion interactions truncated at short range, which are suitable for use in compute-intensive biomolecular force fields and molecular dynamics simulations. Parameters for 26 atom classes encompassing most organic molecules are derived from a fit to Symmetry Adapted Perturbation Theory exchange repulsion energies for the S101 dimer database. Several applications of the multipolar Pauli repulsion model are discussed, including noble gas interactions, analysis of stationary points on the water dimer potential surface, and the directionality of several halogen bonding interactions.
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http://dx.doi.org/10.1063/1.5081060 | DOI Listing |
JACS Au
December 2024
Freie Universität Berlin, Physics Department, Experimental Molecular Biophysics, Arnimallee 14, 14195 Berlin, Germany.
Vibrational Stark effect (VSE) spectroscopy has become one of the most important experimental approaches to determine the strength of noncovalent, electrostatic interactions in chemistry and biology and to quantify their influence on structure and reactivity. Nitriles (C≡N) have been widely used as VSE probes, but their application has been complicated by an anomalous hydrogen bond (HB) blueshift which is not encompassed within the VSE framework. We present an empirical model describing the anomalous HB blueshift in terms of H-bonding geometry, i.
View Article and Find Full Text PDFChemphyschem
November 2024
Institute of Physical and Theoretical Chemistry, Auf der Morgenstelle 18, University of Tübingen, D-72076, Tübingen, Germany.
It is shown that the exchange repulsion energy, E, can be rationalized by partitioning the respective energy expression for two systems with Hartree-Fock orbitals into physically meaningful contributions. A division of E into a positive kinetic and a negative potential part is possible, but these contributions correlate only poorly with the actual exchange repulsion energy. A more meaningful partitioning is derived, where all kinetic energy contributions are collected in a term that vanishes for exact Hartree-Fock orbitals due to their stationarity conditions.
View Article and Find Full Text PDFChempluschem
November 2024
Department of Interventional Medicine and Minimally Invasive Oncology, The Second Hospital of Shandong University, The Institute of Interventional Oncology Shandong University, Jinan, Shandong, 250033, P. R. China.
Chem Rev
December 2024
Department of Chemistry and Shenzhen Grubbs Institute, Southern University of Science and Technology, Shenzhen 518055, China.
Noncovalent interactions between a lone pair of electrons and π systems can be categorized into two types based on the nature of π systems. Lone pair-π(C═O) interactions with π systems of unsaturated, polarized bonds are primarily attributed to orbital interactions, whereas lone pair-π(Ar) interactions with π systems of aromatic functional groups result from electrostatic attractions (for electron-deficient aryls) or dispersion attractions and Pauli repulsions (for electron-rich/neutral aryls). Unlike well-established noncovalent interactions, lone pair-π interactions have been comparatively underappreciated or less used to influence reaction outcomes.
View Article and Find Full Text PDFJ Phys Condens Matter
November 2024
Institute of Physics, Polish Academy of Sciences, Al. Lotników 32/46, 02-688 Warsaw, Poland.
The local density of states (LDOS) for a pair of non-relativistic electrons, influenced by repulsive Coulomb forces, is expressed in term of one-dimensional integrals over Whittaker functions. The computation of the electron pair's LDOS relies on a two-particle Green's function (GF), a generalization of the one-particle GF applicable to a charged particle in an attractive Coulomb potential. By incorporating electron spins and considering the Pauli exclusion principle, the resulting LDOS consists of two components: one originating from an exchange-even two-particle GF and the other from an exchange-odd two-particle GF.
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