A primary concern in forensic anthropology, when reconstructing the biological profile of an unidentified individual is ancestry and sex estimation. The development of multivariate statistical methods and the assembly of large reference sample databases gave rise to the development of specialized computer software for sex and ancestry estimation. Among various such software, the 3D-ID is the only freely-available program that can handle missing values in the input dataset. The present study evaluates the reliability of 3D-ID in correctly classifying ancestry and sex of 158 test subjects from the Athens Collection, a documented Greek population sample. 3D-ID's classification performance was evaluated both separately and collectively for sex and ancestry. According to our results, the accuracy regarding sex estimation ranged from 74.05% to 86.7% for cases with unknown ancestry and reached 89.87% when testing within the Southeastern European reference group, whereas ancestry estimation accuracy reached 70.9% for correctly classifying the Greek individuals to European population groups. We conclude that 3D-ID software exhibits moderate reliability in ancestry estimation and adequate reliability in sex estimation. The Greek population seems to deviate from the 3D-ID software's reference samples and therefore caution should be taken in interpreting 3D-ID's results of unknown subjects, for which the software's reference sample database may not be representative. 3D-ID's guidelines for using 19-landmark configuration improves the accuracy of ancestry estimation and form variables should be preferred for sexing samples.
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http://dx.doi.org/10.1016/j.forsciint.2019.02.004 | DOI Listing |
Elucidating ancestry-specific structures in admixed populations is crucial for comprehending population history and mitigating confounding effects in genome-wide association studies. Existing methods for elucidating the ancestry-specific structures generally rely on frequency-based estimates of genetic relationship matrix (GRM) among admixed individuals after masking segments from ancestry components not being targeted for investigation. However, these approaches disregard linkage information between markers, potentially limiting their resolution in revealing structure within an ancestry component.
View Article and Find Full Text PDFThe Arabian Peninsula is considered the initial site of historic human migration out of Africa. The modern-day indigenous Arabians are believed to be the descendants who remained from the ancient split of the migrants into Eurasia. Here, we investigated how the population history and cultural practices such as endogamy have shaped the genetic variation of the Saudi Arabians.
View Article and Find Full Text PDFSci China Life Sci
January 2025
Institute of Rare Diseases, West China Hospital of Sichuan University, Sichuan University, Chengdu, 610000, China.
Genomic sources from China are underrepresented in the population-specific reference database. We performed whole-genome sequencing or genome-wide genotyping on 1,207 individuals from four linguistically diverse groups (1,081 Sinitic, 56 Mongolic, 40 Turkic, and 30 Tibeto-Burman people) living in North China included in the 10K Chinese People Genomic Diversity Project (10K_CPGDP) to characterize the genetic architecture and adaptative history of ethnic groups in the Silk Road Region of China. We observed a population split between Northwest Chinese minorities (NWCMs) and Han Chinese since the Upper Paleolithic and later Neolithic genetic differentiation within NWCMs.
View Article and Find Full Text PDFGenetics
January 2025
Department of Archaeogenetics, Max Planck Institute for Evolutionary Anthropology, Leipzig 04317, Germany.
Long, identical haplotypes shared between pairs of individuals, known as identity-by-descent (IBD) segments, result from recently shared co-ancestry. Various methods have been developed to utilize IBD sharing for demographic inference in contemporary DNA data. Recent methodological advances have extended the screening for IBD segments to ancient DNA (aDNA) data, making demographic inference based on IBD also possible for aDNA.
View Article and Find Full Text PDFAnn Bot
January 2025
Unit of Ecological Genetics, Institute of Forest Biodiversity and Nature Conservation, Austrian Research Centre for Forests (BFW), Seckendorff-Gudent-Weg 8, Vienna, Vienna.
Background And Aims: Torminalis glaberrima (Gand.) Sennikov & Kurtto is a European tree species currently underutilized in forestry, valued for its high-quality wood and contribution to ecosystem stability. Despite a projected range expansion as climate change progresses, current population fragmentation levels may inhibit the species' ability to migrate and stabilize fragile forest ecosystems.
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