Deep neural networks (DNNs) transform stimuli across multiple processing stages to produce representations that can be used to solve complex tasks, such as object recognition in images. However, a full understanding of how they achieve this remains elusive. The complexity of biological neural networks substantially exceeds the complexity of DNNs, making it even more challenging to understand the representations they learn. Thus, both machine learning and computational neuroscience are faced with a shared challenge: how can we analyze their representations in order to understand how they solve complex tasks? We review how data-analysis concepts and techniques developed by computational neuroscientists can be useful for analyzing representations in DNNs, and in turn, how recently developed techniques for analysis of DNNs can be useful for understanding representations in biological neural networks. We explore opportunities for synergy between the two fields, such as the use of DNNs as in silico model systems for neuroscience, and how this synergy can lead to new hypotheses about the operating principles of biological neural networks.
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http://dx.doi.org/10.1016/j.conb.2019.01.007 | DOI Listing |
BMC Bioinformatics
January 2025
Beijing Institute of Heart Lung and Blood Vessel Diseases, Beijing Anzhen Hospital of Capital Medical University, Beijing, 101100, China.
Background: MicroRNAs (miRNAs) are pivotal in the initiation and progression of complex human diseases and have been identified as targets for small molecule (SM) drugs. However, the expensive and time-intensive characteristics of conventional experimental techniques for identifying SM-miRNA associations highlight the necessity for efficient computational methodologies in this field.
Results: In this study, we proposed a deep learning method called Multi-source Data Fusion and Graph Neural Networks for Small Molecule-MiRNA Association (MDFGNN-SMMA) to predict potential SM-miRNA associations.
BMC Cancer
January 2025
Department of Data Science, Faculty of Interdisciplinary Science and Technology, Tarbiat Modares University, Tehran, Iran.
Background: Melanoma is a highly aggressive skin cancer, where early and accurate diagnosis is crucial to improve patient outcomes. Dermoscopy, a non-invasive imaging technique, aids in melanoma detection but can be limited by subjective interpretation. Recently, machine learning and deep learning techniques have shown promise in enhancing diagnostic precision by automating the analysis of dermoscopy images.
View Article and Find Full Text PDFEur Phys J E Soft Matter
January 2025
Institut für Theoretische Physik 1, Friedrich-Alexander-Universität Erlangen-Nürnberg, Erlangen, 91058, Bavaria, Germany.
We employ graph neural networks (GNN) to analyse and classify physical gel networks obtained from Brownian dynamics simulations of particles with competing attractive and repulsive interactions. Conventionally such gels are characterized by their position in a state diagram spanned by the packing fraction and the strength of the attraction. Gel networks at different regions of such a state diagram are qualitatively different although structural differences are subtile while dynamical properties are more pronounced.
View Article and Find Full Text PDFSci Rep
January 2025
School of Chemical, Petroleum and Gas Engineering, Iran University of Science and Technology, P.O. Box: 16765-163, Tehran, Iran.
In this study, Response Surface Methodology (RSM) and Artificial Neural Networks (ANN) were developed to estimate the equilibrium solubility and partial pressure of CO in blended aqueous solutions of diisopropanolamine (DIPA) and 2-amino-2-methylpropanol (AMP). In this study, several key parameters were analyzed to understand the behavior of the aqueous DIPA/AMP system for CO capture. Including DIPA (9-21 wt%), AMP (9-21 wt%), temperature (323.
View Article and Find Full Text PDFSurg Endosc
January 2025
Department of Clinical Medicine, Aalborg University, Aalborg, Denmark.
Objectives: This study aimed to develop an automated skills assessment tool for surgical trainees using deep learning.
Background: Optimal surgical performance in robot-assisted surgery (RAS) is essential for ensuring good surgical outcomes. This requires effective training of new surgeons, which currently relies on supervision and skill assessment by experienced surgeons.
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