Three-dimensional freehand imaging techniques are gaining wider adoption due to their ?exibility and cost ef?ciency. Typical examples for such a combination of a tracking system with an imaging device are freehand SPECT or freehand 3D ultrasound. However, the quality of the resulting image data is heavily dependent on the skill of the human operator and on the level of noise of the tracking data. The latter aspect can introduce blur or strong artifacts, which can signi?cantly hamper the interpretation of image data. Unfortunately, the most commonly used tracking systems to date, i.e. optical and electromagnetic, present a trade-off between invading the surgeon's workspace (due to line-of-sight requirements) and higher levels of noise and sensitivity due to the interference of surrounding metallic objects. In this work, we propose a novel approach for total variation regularization of data from tracking systems (which we term pose signals) based on a variational formulation in the manifold of Euclidean transformations. The performance of the proposed approach was evaluated using synthetic data as well as real ultrasound sweeps executed on both a Lego phantom and human anatomy, showing signi?cant improvement in terms of tracking data quality and compounded ultrasound images. Source code can be found at https://github.com/IFL-CAMP/pose_regularization.
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http://dx.doi.org/10.1109/TMI.2019.2898480 | DOI Listing |
Surg Endosc
January 2025
Surgery Department, Meander Medical Centre, Maatweg, Amersfoort, 3818 TZ, Utrecht, The Netherlands.
Background: Specific pelvic bone dimensions have been identified as predictors of total mesorectal excision (TME) difficulty and outcomes. However, manual measurement of these dimensions (pelvimetry) is labor intensive and thus, anatomic criteria are not included in the pre-operative difficulty assessment. In this work, we propose an automated workflow for pelvimetry based on pre-operative magnetic resonance imaging (MRI) volumes.
View Article and Find Full Text PDFNat Genet
January 2025
Department of Molecular Medicine, Aarhus University Hospital, Aarhus, Denmark.
Understanding the molecular landscape of nonmuscle-invasive bladder cancer (NMIBC) is essential to improve risk assessment and treatment regimens. We performed a comprehensive genomic analysis of patients with NMIBC using whole-exome sequencing (n = 438), shallow whole-genome sequencing (n = 362) and total RNA sequencing (n = 414). A large genomic variation within NMIBC was observed and correlated with different molecular subtypes.
View Article and Find Full Text PDFCommun Biol
January 2025
Key Laboratory of Climate, Resources and Environment in Continental Shelf Sea and Deep Sea of Department of Education of Guangdong Province, Department of Oceanography, Key Laboratory for Coastal Ocean Variation and Disaster Prediction, College of Ocean and Meteorology, Guangdong Ocean University, Zhanjiang, China.
Leaf endospheres harbor diverse bacterial communities, comprising generalists and specialists, that profoundly affect ecosystem functions. However, the ecological dynamics of generalist and specialist leaf-endophytic bacteria and their responses to climate change remain poorly understood. We investigated the diversity and environmental responses of generalist and specialist bacteria within the leaf endosphere of mangroves across China.
View Article and Find Full Text PDFSci Rep
January 2025
Department of Forest Ecology and Management, Swedish University of Agricultural Sciences, Skogsmarksgränd, Umeå, 901 83, Sweden.
The existence of trait coordination in roots and leaves has recently been debated, with studies reaching opposing conclusions. Here, we assessed trait coordination across twelve boreal tree species. We show that there is only partial evidence for above-belowground coordination for "fast-slow" economic traits across boreal tree species, i.
View Article and Find Full Text PDFEnviron Pollut
January 2025
University of Peradeniya, Peradeniya 20400, Sri Lanka. Electronic address:
The microbial pollution status of river surface water is important to ensure a river-based quality drinking water supply for the public. The present study aimed to investigate bacterial contamination status in the upper Mahaweli River, the main drinking water supplier to the hill country of Sri Lanka. Both the raw surface water and treated water, taken at 14 drinking water treatment plants (DWTPs) along the river segment of 60 km between Kotmale and Victoria reservoirs, were tested for total bacterial counts (TBC), total coliform counts (TCC) and faecal coliform counts (FCC).
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