Amplicon sequencing based profiling of bacterial diversity from Krossfjorden, Arctic.

Data Brief

Department of Marine Biology, Microbiology and Biochemistry, School of Marine Sciences, Cochin University of Science and Technology, Kochi 682016, Kerala, India.

Published: December 2018

In this study, Illumina Miseq sequencing of 16S rRNA gene amplicon was performed on sediments collected from Krossfjorden, Arctic for analyzing the bacterial community structure. Metagenome contained 15,936 sequences with 5,809,491 bp size and 53% G+C content. Metagenome sequence information are now available at NCBI under the Sequence Read Archive (SRA) database with accession no. SRP159159. Taxonomic hits distribution from MG-RAST analysis revealed the dominance of Alpha- and Gamma-subdivisions of Proteobacteria (88.89%) along with Bacteriodetes (8.89%) and Firmicutes (2.22%). Predominant species were TW-7 (24%), (20%) and spp. SM9913 (18%). MG-RAST assisted analysis also detected the presence of a variety of marine taxa like etc. which take part in key ecological functions and biogeochemical activities of Arctic fjord ecosystems.

Download full-text PDF

Source
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6288424PMC
http://dx.doi.org/10.1016/j.dib.2018.11.101DOI Listing

Publication Analysis

Top Keywords

krossfjorden arctic
8
amplicon sequencing
4
sequencing based
4
based profiling
4
profiling bacterial
4
bacterial diversity
4
diversity krossfjorden
4
arctic study
4
study illumina
4
illumina miseq
4

Similar Publications

Want AI Summaries of new PubMed Abstracts delivered to your In-box?

Enter search terms and have AI summaries delivered each week - change queries or unsubscribe any time!