Summary: This note describes nTracer, an ImageJ plug-in for user-guided, semi-automated tracing of multispectral fluorescent tissue samples. This approach allows for rapid and accurate reconstruction of whole cell morphology of large neuronal populations in densely labeled brains.
Availability And Implementation: nTracer was written as a plug-in for the open source image processing software ImageJ. The software, instructional documentation, tutorial videos, sample image and sample tracing results are available at https://www.cai-lab.org/ntracer-tutorial.
Supplementary Information: Supplementary data are available at Bioinformatics online.
Download full-text PDF |
Source |
|---|---|
| http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6748755 | PMC |
| http://dx.doi.org/10.1093/bioinformatics/btz084 | DOI Listing |
Publication Analysis
Top Keywords
densely labeled
8
multispectral tracing
4
tracing densely
4
labeled mouse
4
mouse brain
4
brain ntracer
4
ntracer summary
4
summary note
4
note describes
4
describes ntracer
4
Similar Publications
Want AI Summaries of new PubMed Abstracts delivered to your In-box?
Enter search terms and have AI summaries delivered each week - change queries or unsubscribe any time!