γ-Azaproline Confers pH Responsiveness and Functionalizability on Collagen Triple Helices.

Angew Chem Int Ed Engl

Laboratory of Organic Chemistry, ETH Zürich, Vladimir-Prelog-Weg 3, 8093, Zürich, Switzerland.

Published: March 2019

AI Article Synopsis

  • Proline derivatives with Cγ substituents are useful in biological and materials research, but their stereochemistry can cause unwanted interactions.
  • γ-azaproline (γ-azPro) is introduced as a new proline analogue that is pH-responsive and can be modified, without a stereogenic center at Cγ.
  • Studies show that γ-azPro has a flexible imidazolidine ring, and when included in collagen model peptides (CMPs), it creates pH-responsive triple helices that can be easily functionalized.

Article Abstract

Proline derivatives bearing substituents at Cγ are valuable tools for biological and materials investigations. However, the stereochemistry at Cγ can produce undesired steric or stereoelectronic interactions. Here, we introduce γ-azaproline (γ-azPro), which lacks a stereogenic center at Cγ, as a pH-responsive and functionalizable proline analogue that can adapt to its environment. Conformational analyses by NMR spectroscopy and DFT calculations revealed that the imidazolidine ring of γ-azPro is flexible. Incorporation of γ-azPro into collagen model peptides (CMPs) produced pH-responsive triples helices and triple helices that can be easily functionalized.

Download full-text PDF

Source
http://dx.doi.org/10.1002/anie.201813048DOI Listing

Publication Analysis

Top Keywords

triple helices
8
γ-azaproline confers
4
confers ph responsiveness
4
ph responsiveness functionalizability
4
functionalizability collagen
4
collagen triple
4
helices proline
4
proline derivatives
4
derivatives bearing
4
bearing substituents
4

Similar Publications

This study investigated β-glucan with diverse conformations by using molecular dynamics simulations to analyze their conformational transitions in water. Stable conformations were docked with the Dectin-1 protein to evaluate key metrics such as favorable conformations, root-mean-square deviation, hydrogen bond interactions, and their effects on macrophage activity. Results revealed that single-chain β-1,3-glucan with a degree of polymerization (DP) of 24 forms aggregates in water, while triple-chain β-1,3-glucan with a DP of 6 tends to form double helices.

View Article and Find Full Text PDF

Extraction, characterization, and hemostatic effect of collagen from the scales of Megalonibea fusca.

J Food Sci

December 2024

Department of Cell Biology, College of Life Science and Technology, Jinan University, Guangzhou, China.

Marine collagen is gaining more attraction than terrestrial collagen because it is free of zoonotic disease and religious constrain. In this study, we aimed to investigate and compare the physicochemical properties and functional characteristics of acid-soluble collagen (ASC-MF) and pepsin-soluble collagen (PSC-MF) extracted from scales of Megalonibea fusca. ASC-MF and PSC-MF were evaluated in terms of yield, collagen type, amino acid composition, thermal stability, microstructure, cytotoxicity, and other physicochemical parameters.

View Article and Find Full Text PDF

Noncanonical base pairs play an important role in enabling the structural and functional complexity of RNA. Molecular recognition of such motifs is challenging because of their diversity, significant deviation from the Watson-Crick structures, and dynamic behavior, resulting in alternative conformations of similar stability. Triplex-forming peptide nucleic acids (PNAs) have emerged as excellent ligands for the recognition of Watson-Crick base-paired double helical RNA.

View Article and Find Full Text PDF

Diffusion model assisted designing self-assembling collagen mimetic peptides as biocompatible materials.

Brief Bioinform

November 2024

Engineering Research Center of Ministry of Education on Food Synthetic Biotechnology and School of Biotechnology, Jiangnan University, 1800 Lihu Road, Wuxi, Jiangsu 214222, China.

Article Synopsis
  • The study focuses on improving the self-assembly of collagen mimetic peptides (CMPs) for better mechanical functions, utilizing a diffusion model to explore amino acid sequences from human collagens.
  • Researchers achieved a success rate of 66% in creating CMPs that can self-assemble into triple helices, also devising a model that predicts melting temperatures (Tm) with high accuracy.
  • The results show that CMPs can facilitate hydrogel formation at low concentrations and promote osteoblast differentiation, highlighting the effectiveness of computer-aided design in developing functional CMPs.
View Article and Find Full Text PDF

There are surprisingly few RNA intramolecular triple helices known in the human transcriptome. The structure has been most well-studied as a stability-element at the 3' end of lncRNAs such as and , but the intrigue remains whether it is indeed as rare as it is understood to be or just waiting for a closer look from a new vantage point. TRIPinRNA, our Python-based in silico platform, allows for a comprehensive sequence-pattern search for potential triplex formation in the human transcriptome─noncoding as well as coding.

View Article and Find Full Text PDF

Want AI Summaries of new PubMed Abstracts delivered to your In-box?

Enter search terms and have AI summaries delivered each week - change queries or unsubscribe any time!