Germination timing has a strong influence on direct seeding efforts, and therefore is a closely tracked demographic stage in a wide variety of wildland and agricultural settings. Predictive seed germination models, based on soil moisture and temperature data in the seed zone are an efficient method of estimating germination timing. We utilized Visual Basic for Applications (VBA) to create Auto-Germ, which is an Excel workbook that allows a user to estimate field germination timing based on wet-thermal accumulation models and field temperature and soil moisture data. To demonstrate the capabilities of Auto-Germ, we calculated various germination indices and modeled germination timing for 11 different species, across 6 years, and 10 -steppe sites in the Great Basin of North America to identify the planting date required for 50% or more of the simulated population to germinate in spring (1 March or later), which is when conditions are predicted to be more conducive for plant establishment. Both between and within the species, germination models indicated that there was high temporal and spatial variability in the planting date required for spring germination to occur. However, some general trends were identified, with species falling roughly into three categories, where seeds could be planted on average in either fall ( ssp. and ), early winter (, , , and ), or mid-winter (, , and ) and still not run the risk of germination during winter. These predictions made through Auto-Germ demonstrate that fall may not be an optimal time period for sowing seeds for most non-dormant species if the desired goal is to have seeds germinate in spring.
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http://dx.doi.org/10.1002/ece3.4591 | DOI Listing |
Int J Mol Sci
December 2024
Institute of Sericulture and Tea, Zhejiang Academy of Agricultural Sciences, Hangzhou 310021, China.
Bud dormancy is a critical adaptive trait in woody plants, essential for enduring harsh winter conditions. The relationship between bud break timing and cold resistance is complex and has been a subject of debate. This study utilizes a Genome-Wide Association Study (GWAS) on 201 natural mulberry populations to identify the gene, which shows the strongest association with bud break timing.
View Article and Find Full Text PDFMicrobiome
December 2024
State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
Background: Rice cultivation relies on planting grains harboring beneficial microbiota. However, the origination, distribution, and transmission dynamics of grain-borne bacteria remain unclear.
Results: Using rice grain as a model system, this study investigates the primary sources, major niches in seeds, and the dynamics of community acquisition, maintenance, and transmission between generations of grain-borne bacteria.
Plant Sci
January 2025
Department of Biology, 143 Biology Building, The University of Iowa, Iowa City, IA 52242, USA. Electronic address:
Successive developmental stages of representative early and late juvenile, transition, and adult maize leaves were compared using machine-learning-aided analyses of gene expression patterns to characterize vegetative phase change (VPC), including identification of the timing of this developmental transition in maize. We used t-SNE to organize 32 leaf samples into 9 groups with similar patterns of gene expression. oposSOM yielded clusters of co-expressed genes from key developmental stages.
View Article and Find Full Text PDFPlants (Basel)
October 2024
Hunan Provincial Key Laboratory of Forest Clonal Breeding, Hunan Academy of Forestry, Changsha 410004, China.
Male sterility is a common phenomenon in higher plants and often plays an important role in the selection of superior offspring. 'Xiang Yun' is a mutant of that does not bear fruit after flowering, and its flowering period is significantly longer than that of normal . To explore the timing and molecular mechanisms of sterility in 'Xiang Yun', this study determined the period of sterility through anatomical observation and compared the content of nutrients and the activity of antioxidative enzymes at different stages of flower development.
View Article and Find Full Text PDFEcology
November 2024
Department of Evolution and Ecology, University of California, Davis, California, USA.
The seasonal timing of life history transitions is often critical to fitness, and many organisms rely upon environmental cues to match life cycle events with favorable conditions. In plants, the timing of seed germination is mediated by seasonal cues such as rainfall and temperature. Variation in cue responses among species can reflect evolutionary processes and adaptation to local climate and can affect vulnerability to changing conditions.
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