Sphingomonas deserti sp. nov., isolated from Mu Us Sandy Land soil.

Int J Syst Evol Microbiol

1​State Key Laboratory of Tree Genetics and Breeding, Key Laboratory of Tree Breeding and Cultivation of the State Forestry Administration, Research Institute of Forestry, Chinese Academy of Forestry, Beijing 100091, PR China.

Published: February 2019

A Gram-stain-negative, rod-shaped bacterium, designated as strain GL-C-18, was isolated from soil sample collected at Mu Us Sandy Land, China, and its taxonomic position was investigated using a polyphasic approach. Growth was observed in the presence of 0-1 % (w/v) NaCl (optimum, 0 %), pH 6.0-9.0 (optimum, pH 7.0-8.0) and 20-37 °C. On the basis of 16S rRNA gene sequence similarity, strain GL-C-18 belonged to the family Sphingomonadaceae and was most closely related to Sphingosinicella vermicomposti YC7378 (95.7 %), Sphingomonas oligophenolica S213 (95.0 %) and Sphingobium boeckii 301 (94.8 %). The draft genome of strain GL-C-18 was 6.09 Mb, and the G+C content was 66.0 %. The average nucleotide identity value to Sphingosinicella vermicomposti YC7378 was 83.7 %. The predominant respiratory quinone was Q-10. The major fatty acids were C18 : 1ω7c, summed feature 3 (C16 : 1ω7c and/or C16 : 1ω6c), C16:0 and C14 : 0 2OH. The main polar lipids were sphingoglycolipid, diphosphatidylglycerol, phosphatidylglycerol, phosphatidylethanolamine and phosphatidylcholine. On the basis of chemotaxonomic, phylogenetic and phenotypic evidence, strain GL-C-18 represents a novel species of the genus Sphingomonas, for which the name Sphingomonasdeserti sp. nov. is proposed. The type strain is GL-C-18 (=ACCC 60076=KCTC 62411).

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Source
http://dx.doi.org/10.1099/ijsem.0.003168DOI Listing

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