A System for an Accountable Data Analysis Process in R.

R J

Department of Epidemiology and Biostatistics, UT Health San Antonio, TX, USA,

Published: July 2018

Efficiently producing transparent analyses may be difficult for beginners or tedious for the experienced. This implies a need for computing systems and environments that can efficiently satisfy reproducibility and accountability standards. To this end, we have developed a system, R package, and R Shiny application called adapr (Accountable Data Analysis Process in R) that is built on the principle of accountable units. An accountable unit is a data file (statistic, table or graphic) that can be associated with a provenance, meaning how it was created, when it was created and who created it, and this is similar to the 'verifiable computational results' (VCR) concept proposed by Gavish and Donoho. Both accountable units and VCRs are version controlled, sharable, and can be incorporated into a collaborative project. However, accountable units use file hashes and do not involve watermarking or public repositories like VCRs. Reproducing collaborative work may be highly complex, requiring repeating computations on multiple systems from multiple authors; however, determining the provenance of each unit is simpler, requiring only a search using file hashes and version control systems.

Download full-text PDF

Source
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6261481PMC

Publication Analysis

Top Keywords

accountable units
12
accountable data
8
data analysis
8
analysis process
8
created created
8
file hashes
8
accountable
5
system accountable
4
process efficiently
4
efficiently producing
4

Similar Publications

Aim: The present study aimed to explore the unprofessional behavior of educators, senior students, and peers in the education process of dental and oral health services.

Method: This qualitative study employed a conventional content analysis approach. The undergraduate students (n = 21) were recruited to participate in the study through purposive sampling.

View Article and Find Full Text PDF

From Moral Distress to Moral Integrity: Qualitative Evaluation of a New Moral Conflict Assessment Tool.

Am J Crit Care

January 2025

Peter Dodek is a professor emeritus, Division of Critical Care Medicine and Center for Advancing Health Outcomes, St Paul's Hospital and University of British Columbia, Vancouver.

Background: Moral distress affects the well-being of health care professionals and can lead to burnout and attrition. Assessing moral distress and taking action based on this assessment are important. A new moral conflict assessment (MCA) designed to prompt action was developed and tested.

View Article and Find Full Text PDF

Differences between neonatal units with high and low rates of breast milk feeding for very preterm babies at discharge: a qualitative study of staff experiences.

BMC Pregnancy Childbirth

December 2024

NIHR Policy Research Unit in Maternal and Neonatal Health and Care, National Perinatal Epidemiology Unit, Nuffield Department of Public Health, University of Oxford, Old Road Campus, Headington, Oxford, OX3 7LF, UK.

Background: Breast milk has significant benefits for preterm babies, but 'very preterm' babies are unable to feed directly from the breast at birth. Their mothers have to initiate and sustain lactation through expressing milk for tube feeding until their babies are developmentally ready to feed orally. There are wide disparities between neonatal units in England in rates of breast milk feeding at discharge.

View Article and Find Full Text PDF
Article Synopsis
  • The study investigates how reallocating time among physical activity, sedentary behavior, and sleep affects obesity indicators like BMI and waist circumference across various age groups.
  • Researchers analyzed data from 9,818 participants using isotemporal substitution models to understand the implications of these behavior changes.
  • Results indicated that even small shifts of 10-30 minutes can significantly impact obesity, with reallocating moderate-to-vigorous physical activity (MVPA) to lighter activities or sedentary behavior having particularly detrimental effects.
View Article and Find Full Text PDF

Objectives: to understand nurses' experiences in caring for people with mental health problems hospitalized due to clinical comorbidities in non-psychiatric Inpatient Units.

Methods: qualitative study, guided by Alfred Schutz's social phenomenology. Sixteen phenomenological interviews were conducted.

View Article and Find Full Text PDF

Want AI Summaries of new PubMed Abstracts delivered to your In-box?

Enter search terms and have AI summaries delivered each week - change queries or unsubscribe any time!