The draft genome sequence of "" strain BS10, a nitrite oxidizing bacterium isolated from activated sludge.

Stand Genomic Sci

1Department of Microbiology, IWWR, Radboud University, Heyendaalseweg 135, 6525 AJ Nijmegen, Netherlands.

Published: November 2018

The genus is considered to be the most widespread and abundant group of nitrite-oxidizing bacteria in many natural and man-made ecosystems. However, the ecophysiological versatility within this phylogenetic group remains highly understudied, mainly due to the lack of pure cultures and genomic data. To further expand our understanding of this biotechnologically important genus, we analyzed the high quality draft genome of "" strain BS10, a sublineage II that was isolated from a municipal wastewater treatment plant in Hamburg, Germany. The genome of "" has a size of 3,756,190 bp and contains 3968 genomic objects, of which 3907 are predicted protein-coding sequences. Thorough genome annotation allowed the reconstruction of the "" core metabolism for energy conservation and carbon fixation. Comparative analyses indicated that most metabolic features are shared with and "", despite their ecological niche differentiation and phylogenetic distance. In conclusion, the genome of "" provides important insights into the genomic diversity of the genus and provides a foundation for future comparative genomic studies that will generate a better understanding of the nitrification process.

Download full-text PDF

Source
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6251164PMC
http://dx.doi.org/10.1186/s40793-018-0338-7DOI Listing

Publication Analysis

Top Keywords

draft genome
8
strain bs10
8
genome sequence
4
sequence strain
4
bs10 nitrite
4
nitrite oxidizing
4
oxidizing bacterium
4
bacterium isolated
4
isolated activated
4
activated sludge
4

Similar Publications

Want AI Summaries of new PubMed Abstracts delivered to your In-box?

Enter search terms and have AI summaries delivered each week - change queries or unsubscribe any time!