We introduce a novel method to generate biologically grounded synthetic cerebrovasculature models in a datadriven fashion. First, the centerlines of vascular filaments embedded in an acquired imaging volume are obtained by a segmentation algorithm. That imaging volume is reconstructed from a graph encoding of the centerline (i.e., generating the model's ground truth) and the segmentation algorithm is applied to the resultant volume. As the location and characteristics of the vasculature embedded in this volume are known,theaccuracyofthesegmentationalgorithmcanbeassessed. Moreover, because the synthetic volume was reconstructed directly from biological data, an assessment is made on embedded filaments that are representative of the topologicalandgeometricalcharacteristicsofthedataset. Webelieve thatsuchmodels will provide the means necessary for the enhanced evaluation of vascular segmentation algorithms.

Download full-text PDF

Source
http://dx.doi.org/10.1109/EMBC.2018.8513456DOI Listing

Publication Analysis

Top Keywords

segmentation algorithms
8
imaging volume
8
segmentation algorithm
8
volume reconstructed
8
volume
5
data-driven synthetic
4
synthetic cerebrovascular
4
cerebrovascular models
4
models validation
4
segmentation
4

Similar Publications

Background: Detecting kidney trauma on CT scans can be challenging and is sometimes overlooked. While deep learning (DL) has shown promise in medical imaging, its application to kidney injuries remains underexplored. This study aims to develop and validate a DL algorithm for detecting kidney trauma, using institutional trauma data and the Radiological Society of North America (RSNA) dataset for external validation.

View Article and Find Full Text PDF

Purpose: To create a system to enable the identification of histological variants of bladder cancer in a simple, efficient, and noninvasive manner.

Material And Methods: In this multicenter diagnostic study, we retrospectively collected basic information and CT images about the patients concerned from three hospitals. An interactive deep learning-based bladder cancer image segmentation framework was constructed using the Swin UNETR algorithm for further features extraction.

View Article and Find Full Text PDF

Lightweight Retinal Layer Segmentation With Global Reasoning.

IEEE Trans Instrum Meas

May 2024

School of Mechanical Engineering, Shandong University, Jinan 250061, Shandong, China.

Automatic retinal layer segmentation with medical images, such as optical coherence tomography (OCT) images, serves as an important tool for diagnosing ophthalmic diseases. However, it is challenging to achieve accurate segmentation due to low contrast and blood flow noises presented in the images. In addition, the algorithm should be light-weight to be deployed for practical clinical applications.

View Article and Find Full Text PDF

From a methodological perspective, the "mode effect," which refers to the phenomenon where different survey methods can yield different responses despite asking the same questions, presents a significant contemporary challenge. Existing solutions suggested in the literature, such as the implementation of multi-mode surveys, have their drawbacks as they may introduce bias that could impact respondent behavior. This study aims to identify distinct visitor segments within two large populations, assessing their patterns of visitation to both national and state parks.

View Article and Find Full Text PDF

Significance: Developments of anti-gametocyte drugs have been delayed due to insufficient understanding of gametocyte biology. We report a systematic workflow of data processing algorithms to quantify changes in the absorption spectrum and cell morphology of single malaria-infected erythrocytes. These changes may serve as biomarkers instrumental for the future development of antimalarial strategies, especially for anti-gametocyte drug design and testing.

View Article and Find Full Text PDF

Want AI Summaries of new PubMed Abstracts delivered to your In-box?

Enter search terms and have AI summaries delivered each week - change queries or unsubscribe any time!