AI Article Synopsis

  • Pfam has seen substantial growth, now featuring 17,929 families in release 32.0, with ongoing efforts to enhance existing families through improved domain boundaries and functional annotations.
  • Collaboration with RepeatsDB has led to better definitions for tandem repeat families, while a comparison with the ECOD database resulted in the creation of 825 new family classifications.
  • The integration of authors' ORCID identifiers allows contributors to receive appropriate credit for their work in Pfam, linking their contributions to their academic profiles.

Article Abstract

The last few years have witnessed significant changes in Pfam (https://pfam.xfam.org). The number of families has grown substantially to a total of 17,929 in release 32.0. New additions have been coupled with efforts to improve existing families, including refinement of domain boundaries, their classification into Pfam clans, as well as their functional annotation. We recently began to collaborate with the RepeatsDB resource to improve the definition of tandem repeat families within Pfam. We carried out a significant comparison to the structural classification database, namely the Evolutionary Classification of Protein Domains (ECOD) that led to the creation of 825 new families based on their set of uncharacterized families (EUFs). Furthermore, we also connected Pfam entries to the Sequence Ontology (SO) through mapping of the Pfam type definitions to SO terms. Since Pfam has many community contributors, we recently enabled the linking between authorship of all Pfam entries with the corresponding authors' ORCID identifiers. This effectively permits authors to claim credit for their Pfam curation and link them to their ORCID record.

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Source
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6324024PMC
http://dx.doi.org/10.1093/nar/gky995DOI Listing

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