Nonequilibrium associative retrieval of multiple stored self-assembly targets.

Proc Natl Acad Sci U S A

Physics of Living Systems Group, Department of Physics, Massachusetts Institute of Technology, Cambridge, MA 02139;

Published: November 2018

Many biological systems rely on the ability to self-assemble different target structures using the same set of components. Equilibrium self-assembly suffers from a limited capacity in such cases, due to an increasing number of decoy states that grows rapidly with the number of targets encoded. Moreover, improving the kinetic stability of a target at equilibrium carries the price of introducing kinetic traps, leading to slower assembly. Using a toy physical model of interacting particles, we demonstrate that local driving can improve both the assembly time and kinetic stability of multitarget self-assembly, as well as reduce fluctuations around the target configuration. We further show that the local drive can result in a steady-state probability distribution over target structures that deviates from the Boltzmann distribution in a way that depends on the types of interactions that stabilize the targets. Our results illustrate the role that nonequilibrium driving plays in overcoming tradeoffs that are inherent to equilibrium assemblies.

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Source
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6233095PMC
http://dx.doi.org/10.1073/pnas.1805769115DOI Listing

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