Several important morphogenetic processes belong to the category of collective cell movements (CCM), by which we mean coordinated rearrangements of many neighboring cells. The causes of the dynamic order established during CCM are still unclear. We performed statistical studies of rates and angular orientations of cell rearrangements in two kinds of embryonic tissues, which we categorized as "committed" (in the sense of being capable of autonomous CCM) as opposed to "naïve" tissues, which are those that require external forces in order to exhibit full scale CCM. In addition, we distinguished two types of cell rearrangements: first, those in which mutual cell-cell shifts characterizing the local dynamics (LD); and, second, those which moved in reference to common external coordinates (global dynamics, GD). We observed that in most cases LD rates deviated from normal distributions and do so by creating excesses of extensively converging and moderately diverging cells. In contrast, GD was characterized by nearly random behavior of slowly moving cells, combined with increased angular focusing of the fast cells trajectories as well as bimodal distribution of cell rates. When committed tissues were opposed by external mechanical forces, then they tended to preserve the inherent CCM patterns. On the other hand, the naïve ones reacted by creating two orthogonal cells flows, one of these coinciding with the force direction. We consider CCM as a self-organizing process based on feedbacks between converging and diverging cell shifts, which is able to focus the trajectories imposed by external forces.
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http://dx.doi.org/10.1016/j.biosystems.2018.09.011 | DOI Listing |
Elife
January 2025
Department of Biochemistry and Molecular Biology, Indiana University School of Medicine, Indianapolis, United States.
Single-nucleus RNA sequencing (snRNA-seq), an alternative to single-cell RNA sequencing (scRNA-seq), encounters technical challenges in obtaining high-quality nuclei and RNA, persistently hindering its applications. Here, we present a robust technique for isolating nuclei across various tissue types, remarkably enhancing snRNA-seq data quality. Employing this approach, we comprehensively characterize the depot-dependent cellular dynamics of various cell types underlying mouse adipose tissue remodeling during obesity.
View Article and Find Full Text PDFEnviron Monit Assess
January 2025
Air Quality, Climate Change and Health (ACH) Lab, Department of Public Health and Informatics, Jahangirnagar University, 1342, Savar, Dhaka, Bangladesh.
The growing global attention on urban air quality underscores the need to understand the spatiotemporal dynamics of nitrogen dioxide (NO) and its environmental and anthropogenic factors, particularly in cities like Dhaka (Gazipur), Bangladesh, which suffers from some of the world's worst air quality. This study analysed NO concentrations in Gazipur from 2019 to 2022 using Sentinel-5P TROPOMI data on the Google Earth Engine (GEE) platform. Correlations and regression analysis were done between NO levels and various environmental factors, including land surface temperature (LST), normalized difference vegetation index (NDVI), land use and land cover (LULC), population density, road density, settlement density, and industry density.
View Article and Find Full Text PDFMol Biol Rep
January 2025
Institute of Health Sciences, Department of Medical and Surgical Research, Hacettepe University, Ankara, Turkey.
Background: La-related protein 7 (LARP7) is a key regulator of RNA metabolism and is thought to play a role in various cellular processes. LARP7 gene autosomal recessive mutations are the cause of Alazami syndrome, which presents with skeletal abnormalities, intellectual disabilities, and facial dysmorphisms. This study aimed to determine the role of LARP7 in modulating gene expression dynamics during osteogenesis.
View Article and Find Full Text PDFMicrobiol Spectr
January 2025
Department of Biological Sciences, University of Notre Dame, Notre Dame, Indiana, USA.
Unlabelled: Group A (GAS) is a major human pathogen that causes several invasive diseases including necrotizing fasciitis. The host coagulation cascade initiates fibrin clots to sequester bacteria to prevent dissemination into deeper tissues. GAS, especially skin-tropic bacterial strains, utilize specific virulence factors, plasminogen binding M-protein (PAM) and streptokinase (SK), to manipulate hemostasis and activate plasminogen to cause fibrinolysis and fibrin clot escape.
View Article and Find Full Text PDFJMIR Public Health Surveill
January 2025
Buehler Center for Health Policy and Economics, Robert J. Havey, MD Institute for Global Health, Northwestern University, 420 E. Superior, Chicago, US.
Background: This study updates the COVID-19 pandemic surveillance in East Asia and the Pacific we first conducted in 2020 with two additional years of data for the region.
Objective: First, we measure whether there was an expansion or contraction of the pandemic in East Asia and the Pacific region when the World Health Organization (WHO) declared the end of the COVID-19 public health emergency of international concern on May 5, 2023. Second, we use dynamic and genomic surveillance methods to describe the dynamic history of the pandemic in the region and situate the window of the WHO declaration within the broader history.
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