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Draft genome sequence of an NDM-1-, OXA-421- and AmpC-producing Acinetobacter pittii ST220 in Anhui Province, China. | LitMetric

Draft genome sequence of an NDM-1-, OXA-421- and AmpC-producing Acinetobacter pittii ST220 in Anhui Province, China.

J Glob Antimicrob Resist

Department of Emergency Intensive Care Unit, Affiliated Provincial Hospital of Anhui Medical University, Anhui Medical University, No. 17 Lujiang Road, Hefei, Anhui, China; Department of Emergency Intensive Care Unit, First Affiliated Hospital of University of Science and Technology of China, University of Science and Technology of China, No. 17 Lujiang Road, Hefei, Anhui, China. Electronic address:

Published: September 2018

Objectives: Acinetobacter pittii carrying the bla gene is frequently reported in the world recently, however most of the bla genes are located on plasmids. Here we report a multidrug-resistant (MDR) A. pittii isolated in China co-harbouring bla, bla and bla in the genome.

Methods: Bacterial genomic DNA was extracted using the cetyl trimethylammonium bromide (CTAB) method. Whole-genome sequencing of A. pittii was performed using an Illumina MiSeq system (2×251bp) in combination with PacBio single-molecule real-time (SMRT) sequencing. De novo genome assembly was performed using SPAdes v.3.9.0, A5-miseq v.20150522 and Canu v.1.4, respectively. The genome sequence was analysed by bioinformatics methods.

Results: The 4211131-bp genome with 38.99% G+C content displayed several resistance genes, including bla, bla and bla. Meanwhile, 4426 protein-coding sequences were predicted within the genome.

Conclusion: The genome sequence reported here can be compared with the already published genomes of NDM-1-producing isolates. These data might facilitate further understanding of the specific genomic feature of MDR A. pittii in China.

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Source
http://dx.doi.org/10.1016/j.jgar.2018.07.008DOI Listing

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