Coordination numbers in hydrated Cu(II) ions.

J Mol Model

Departamento de Química, División de Ciencias Básicas e Ingeniería, Universidad Autónoma Metropolitana-Iztapalapa, San Rafael Atlixco 186, Col. Vicentina, Iztapalapa, A.P. 55-534, C. P. 09340, Ciudad de México, Mexico.

Published: July 2018

AI Article Synopsis

  • The study investigates the potential energy surface of copper-hydroxide clusters with different water molecule counts (n=12, 16, 18) using a modified simulated annealing method and the PM7 semiempirical approach, generating around 100,000 isomers.
  • The clusters exhibit coordination numbers of 4, 5, and 6, with a focus on finding isomers optimized through various computational techniques, revealing that fivefold coordination is predominant under certain methods, while sixfold coordination becomes relevant with more water molecules.
  • The research analyzes axial and equatorial interactions using quantum theory, highlighting a partial covalent nature in the bonds between copper and water, informing future studies on cluster behavior.

Article Abstract

The potential energy surface of [Cu(HO)] clusters with n = 12, 16, and 18 was explored by using a modified version of the simulated annealing method. Such exploration was carried out by using the PM7 semiempirical method to obtain around 100,000 isomers, which provide candidates to be optimized with PBE0-D3, M06-2X, and BHLYP exchange-correlation functionals coupled with the 6-311++G** basis set. These methods based on the Kohn-Sham approach delivered isomers with coordination numbers of 4, 5, and 6. The analysis used to obtain coordination numbers was based on geometrical parameters and the quantum theory of atoms in molecules (QTAIM) approach. Our methodology found only one isomer with fourfold coordination and its probabilities to appear in these clusters are quite small for high temperatures. The procedure used in this article predicts important populations of fivefold and sixfold coordination clusters, in fact, the fivefold coordination dominates for PBE0-D3 and BHLYP methods, although the sixfold coordination starts to be important when the number of water molecules is increased. The nature of axial and equatorial contacts is discussed in the context of the QTAIM and the noncovalent interaction index (NCI), which gives a clear classification of such orientations. Also, these methods suggest a partial covalent interaction between the Cu and water molecules in both positions; equatorial and axial.

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Source
http://dx.doi.org/10.1007/s00894-018-3725-5DOI Listing

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