Residue selective N CEST and CPMG experiments for studies of millisecond timescale protein dynamics.

J Magn Reson

Beijing Nuclear Magnetic Resonance Center, Peking University, Beijing, China; College of Chemistry and Molecular Engineering, Peking University, Beijing, China; College of Life Sciences, Peking University, Beijing, China. Electronic address:

Published: August 2018

AI Article Synopsis

  • Proteins are dynamic molecules that change shapes to carry out biological functions, and specific NMR techniques help analyze these shape changes on a fast timescale.
  • Traditional NMR methods like CPMG and CEST face challenges, such as low sensitivity for certain signals and lengthy setup times, which limit their effectiveness.
  • A new approach using residue selective N CEST and CPMG pulse sequences improves these techniques by enhancing signal quality and allowing analysis of overlapping signals, proving beneficial when tested on various proteins.

Article Abstract

Proteins are intrinsically dynamic molecules and undergo exchanges among multiple conformations to perform biological functions. The CPMG relaxation dispersion and CEST experiments are two important solution NMR techniques for characterizing the conformational exchange processes on the millisecond timescale. Traditional pseudo 3D N CEST and CPMG experiments have certain limitations in their applications. For example, both experiments have low sensitivity for broadened resonances, and the process of optimizing sample conditions and experimental parameters are often time consuming. To overcome these limitations, we herein present a new set of residue selective N CEST and CPMG pulse sequences by employing the Hartmann-Hahn cross-polarization transfer of magnetization in both 1D and 2D schemes. Combined with frequency labeling in the indirect dimension using only a small number of increments, the pulse sequences in the 2D scheme can be applied on resonances in overlapped regions of the H-N HSQC spectrum. The pulse sequences were further applied on several proteins, demonstrating their advantages over the traditional CEST and CPMG experiments under specific circumstances.

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http://dx.doi.org/10.1016/j.jmr.2018.05.016DOI Listing

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