The insertion of the non-heme Fe cofactor into nitric oxide reductase from P. denitrificans depends on NorQ and NorD accessory proteins.

Biochim Biophys Acta Bioenerg

Department of Biochemistry and Biophysics, Stockholm University, SE-106 91 Stockholm, Sweden. Electronic address:

Published: October 2018

AI Article Synopsis

  • Bacterial NO reductases (NOR) convert nitric oxide (NO) during processes such as denitrification and detoxification, with cNOR from Paracoccus denitrificans being an example.
  • A new purification method for cNOR was established using a His-tag in E. coli, resulting in a structurally and functionally similar enzyme to the non-tagged version.
  • The study found that essential genes NorQ and NorD are required for the functional cNOR formation, as they aid in the insertion of non-heme iron, which is crucial for the enzyme's activity.

Article Abstract

Bacterial NO reductases (NOR) catalyze the reduction of NO into NO, either as a step in denitrification or as a detoxification mechanism. cNOR from Paracoccus (P.) denitrificans is expressed from the norCBQDEF operon, but only the NorB and NorC proteins are found in the purified NOR complex. Here, we established a new purification method for the P. denitrificans cNOR via a His-tag using heterologous expression in E. coli. The His-tagged enzyme is both structurally and functionally very similar to non-tagged cNOR. We were also able to express and purify cNOR from the structural genes norCB only, in absence of the accessory genes norQDEF. The produced protein is a stable NorCB complex containing all hemes and it can bind gaseous ligands (CO) to heme b, but it is catalytically inactive. We show that this deficient cNOR lacks the non-heme iron cofactor Fe. Mutational analysis of the nor gene cluster revealed that it is the norQ and norD genes that are essential to form functional cNOR. NorQ belongs to the family of MoxR P-loop AAA+ ATPases, which are in general considered to facilitate enzyme activation processes often involving metal insertion. Our data indicates that NorQ and NorD work together in order to facilitate non-heme Fe insertion. This is noteworthy since in many cases Fe cofactor binding occurs spontaneously. We further suggest a model for NorQ/D-facilitated metal insertion into cNOR.

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http://dx.doi.org/10.1016/j.bbabio.2018.05.020DOI Listing

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Article Synopsis
  • Bacterial NO reductases (NOR) convert nitric oxide (NO) during processes such as denitrification and detoxification, with cNOR from Paracoccus denitrificans being an example.
  • A new purification method for cNOR was established using a His-tag in E. coli, resulting in a structurally and functionally similar enzyme to the non-tagged version.
  • The study found that essential genes NorQ and NorD are required for the functional cNOR formation, as they aid in the insertion of non-heme iron, which is crucial for the enzyme's activity.
View Article and Find Full Text PDF

In 85-Mda plasmid (p85) of plant-associated bacteria Azospirillum brasilense Sp245 model strain, the genes encoding copper-containing nitrite reductase (nirK); heterodimeric NO-reductase (norCB); NorQ and NorD proteins affecting synthesis and (or) activation of NirK and (or) NO-reductase (norQD); catalytic subunit I ofcytochrom c oxidase (CccoN); presumable NO sensor carrying two hemeerythrine domains (orf181); and an enzyme required for synthesis of presumable NO antagonist, homocystein (metC) were identified. In the same region of p85, orf293 encoding transcriptional regulator of LysR type, orf208 whose protein product carries a formylmethanofuran dehydrogenase subunit E domain, and an orf164-encoding conservative secretory protein with unknown function were also found. Localization of a set of denitrification genes in the plasmid DNA A.

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