AI Article Synopsis
- Molecular breeders face challenges in utilizing genomic information for crop breeding, especially in less-studied crops.
- A new comparative analysis tool and web-based genome viewer have been developed to streamline the identification of orthologous genes using synteny and sequence similarity among crops like tomato, pepper, and potato.
- This tool features a user-friendly interface that aids in exploring functional orthologs and offers access to SNP markers, promoting faster molecular marker development for breeding in the Solanaceae family.
Article Abstract
It is necessary for molecular breeders to overcome the difficulties in applying abundant genomic information to crop breeding. Candidate orthologs would be discovered more efficiently in less-studied crops if the information gained from studies of related crops were used. We developed a comparative analysis tool and web-based genome viewer to identify orthologous genes based synteny as well as sequence similarity between tomato, pepper and potato. The tool has a step-by-step interface with multiple viewing levels to support the easy and accurate exploration of functional orthologs. Furthermore, it provides access to single nucleotide-polymorphism markers from the massive genetic resource pool in order to accelerate the development of molecular markers for candidate orthologs in the Solanaceae. This tool provides a bridge between genome data and breeding by supporting effective marker development, data utilization and communication.Database URL: http://tgsol.seeders.co.kr/scomp/.
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| http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6007222 | PMC |
| http://dx.doi.org/10.1093/database/bay047 | DOI Listing |
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