The study on microbial community composition in rhizosphere soils surrounding different order roots is of great significance for understanding the interactions between roots and microbes. Using Illumina Miseq sequencing technology, this study analyzed the differences of fungal community structure in bulk soils and rhizosphere soils surrounding different root orders of poplar (Populus × euramericana 'Neva') tree. The microbial species annotation showed that 128, 124, 130 and 101 fungal genera were classified in the rhizosphere soils around 1-2 order roots (R1), 3 order roots (R2), 4-5 order roots (R3) and in the bulk soils (NR), respectively. The differences of present fungal genera indicated a selectivity mechanism driving fungal community assembly in poplar rhizosphere soils. There were seven fungal genera with more than 1% of relative abundance in rhizosphere soils. Trichoderma was the dominant fungal genus in R1. Trichosporon and Aspergillus were the dominant fungal genera in R2 and R3, respectively. Alpha (α) diversity indices showed that the fungal diversity was significantly different among root orders. Specifically, the diversity of soil fungal community in the rhizosphere soils around lower order roots was significantly higher than that of higher order roots (P<0.05). Beta (β) diversity indices showed that the dissimilarity of fungal community composition increased along with the root orders. All these results implied the different composition and structure of fungal community are closely related with the function of fine root orders.
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http://dx.doi.org/10.13287/j.1001-9332.201704.004 | DOI Listing |
Data Brief
February 2025
Department of Biology, Allama Iqbal Open University, Islamabad, Pakistan.
Plants are colonized by a vast array of microorganisms that outstrip plant cell densities and genes, thus referred to as plant's second genome or extended genome. The microbial communities exert a significant influence on the vigor, growth, development and productivity of plants by supporting nutrient acquisition, organic matter decomposition and tolerance against biotic and abiotic stresses such as heat, high salt, drought and disease, by regulating plant defense responses. The rhizosphere is a complex micro-ecological zone in the direct vicinity of plant roots and is considered a hotspot of microbial diversity.
View Article and Find Full Text PDFF1000Res
January 2025
Department of Zoology, Patan Multiple Campus, Tribhuvan University, Lalitpur, Bagmati, 0097, Nepal.
Background: spp. hold significant potential as biocontrol agents in agriculture due to their antagonistic properties against plant pathogens. The study aimed to characterize and identify isolates from rhizospheric regions of vegetable crops.
View Article and Find Full Text PDFSci Rep
January 2025
Instituto Multidisciplinario de Investigación y Transferencia Agroalimentaria y Biotecnológica (IMITAB, UNVM-CONICET), Villa María, Argentina.
This study investigated plant growth-promoting (PGP) mechanisms in Priestia aryabhattai VMYP6 and Paenibacillus sp. VMY10, isolated from tomato roots. Their genomes were initially assessed in silico through various approaches, and these observations were then compared with results obtained in vitro and in vivo.
View Article and Find Full Text PDFJ Hazard Mater
January 2025
Key Laboratory for Humid Subtropical Eco-Geographical Processes of the Ministry of Education, Fujian Normal University, Fuzhou, Fujian 350117, China. Electronic address:
Hyperaccumulators harbor potentials for remediating rare earth elements (REEs)-contaminated soils. However, how they thrive in low-nutrient abandoned REEs mining sites is poorly understood. Three ferns (REEs-hyperaccumulators Dicranopteris pedata and Blechnum orientale, and non-hyperaccumulator Pteris vittata) along with their rhizosphere soils were collected to answer this question by comparing differences in soil nutrient levels, soil and plant REEs concentrations, and bacterial diversity, composition, and functions.
View Article and Find Full Text PDFMicrob Ecol
January 2025
Botany Department, Faculty of Science, Fayoum University, Fayoum, 63514, Egypt.
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