Disordered structures producing a non-iridescent color impression have been shown to feature a spherically shaped Fourier transform of their refractive-index distribution. We determine the direction and efficiency of scattering from thin films made from such structures with the help of the Ewald sphere construction which follows from first-order scattering approximation. This way we present a simple geometrical argument why these structures are well suited for creating short wavelength colors like blue but are hindered from producing long wavelength colors like red. We also numerically synthesize a model structure dedicated to produce a sharp spherical shell in reciprocal space. The reflectivity of this structure as predicted by the first-order approximation is compared to direct electromagnetic simulations. The results indicate the Ewald sphere construction to constitute a simple geometrical tool that can be used to describe and to explain important spectral and directional features of the reflectivity. It is shown that total internal reflection in the film in combination with directed scattering can be used to obtain long wavelength structural colors.
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Methods Enzymol
November 2024
Diamond Light Source Ltd, Harwell Science and Innovation Campus, Didcot, Oxfordshire, United Kingdom; Rosalind Franklin Institute, Harwell Science and Innovation Campus, Didcot, Oxfordshire, United Kingdom.
This chapter describes additions to the DIALS software package for processing serial still-shot crystallographic data, and the implementation of a pipeline, xia2.ssx, for processing and merging serial crystallography data using DIALS programs. To integrate partial still-shot diffraction data, a 3D gaussian profile model was developed that can describe anisotropic spot shapes.
View Article and Find Full Text PDFPhys Rev E
September 2024
Courant Institute of Mathematical Sciences, New York University, New York 10003, USA.
Media with correlated disorder display unexpected transport properties, but it is still a challenge to design structures with desired spectral features at scale. In this work, we introduce an optimal formulation of this inverse problem by means of the nonuniform fast Fourier transform, thus arriving at an algorithm capable of generating systems with arbitrary spectral properties, with a computational cost that scales O(NlogN) with system size. The method is extended to accommodate arbitrary real-space interactions, such as short-range repulsion, to simultaneously control short- and long-range correlations.
View Article and Find Full Text PDFbioRxiv
August 2024
Department of Biophysics, The University of Texas Southwestern Medical Center, 5323 Harry Hines Blvd., Dallas, TX, 75390, United States.
The correct description of quantum scattering places the observed scattering contributions on the Ewald's sphere and its Friedel mate. In electron microscopy, due to the large radius of the Ewald's sphere, these contributions are typically merged during data analysis. We present an approach that separates and factorizes these contributions into inversion-symmetric and inversion-antisymmetric components.
View Article and Find Full Text PDFIUCrJ
September 2024
Biological and Environmental Science and Engineering, King Abdullah University of Science and Technology, 4700 KAUST, Thuwal 23955, Saudi Arabia.
Single-particle cryo-electron microscopy (cryo-EM) has become an essential structural determination technique with recent hardware developments making it possible to reach atomic resolution, at which individual atoms, including hydrogen atoms, can be resolved. In this study, we used the enzyme involved in the penultimate step of riboflavin biosynthesis as a test specimen to benchmark a recently installed microscope and determine if other protein complexes could reach a resolution of 1.5 Å or better, which so far has only been achieved for the iron carrier ferritin.
View Article and Find Full Text PDFThe direction variation of the fundamental wave in the same nonlinear photonic crystal would cause different pattern of harmonics generation. In a 2D/3D crystal with dense reciprocal lattice vectors, there will be large numbers of conical harmonic beams evolving with direction change of the fundamental wave. By rearranging the Ewald sphere and superposing it into the Ewald shell, we have a hybrid Ewald construction.
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